PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM90523.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

LBD

Protein Properties

Length: 190aa MW: 20381.1 Da PI: 8.195

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM90523.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	146.2	9.4e-46	11	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC ++C++apyfp e+p+kf nvhk+FGasnv+kll++lp+++reda++sl+yeAear+rdPvyG+vg i+ lq+q+++l++el+++++ OWM90523.1 11 PCAACKFLRRKCMPGCIFAPYFPPEEPQKFVNVHKIFGASNVTKLLNELPPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANA 109 7*********************************************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence
MSSSNSSYNS PCAACKFLRR KCMPGCIFAP YFPPEEPQKF VNVHKIFGAS NVTKLLNELP 60 PHQREDAVNS LAYEAEARVR DPVYGCVGAI SFLQRQVQRL QKELDAANAD LIRYAYNGAI 120 PPSALPPGTT SMQPVLPVAR RRSSMEFAAD PGSISNGGGG FFQPPPYSLP WDNNLSGDIN 180 GGGGGGGSMI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.2	1e-69	LBD family protein