PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM90392.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

bHLH

Protein Properties

Length: 386aa MW: 42399.6 Da PI: 10.0725

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM90392.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.9	5.9e-16	186	231	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ +L++l+P++ +K +Ka++L +++eY+k+Lq OWM90392.1 186 HNQSERRRRDRINQKMKTLQRLVPNS-----RKTDKASMLDEVIEYLKQLQ 231 9**********************9.....8****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MPKAVWSNND TLESIVRQAS NHNQYHVSNV ATNDVNPTCV NKGSCSVDKK PDKLVKTNSG 60 RTRSENITAP VLKKRVRSES EQCRTTSNNL FSTSSGYRNN DQEERKVKIT DHRSMCASAS 120 ATFGREDRDT TMMTWPSFDS SRSFKTNQTT DDDSAASPGG SEEDQETKTE TGRSLSSRQT 180 RAAAIHNQSE RRRRDRINQK MKTLQRLVPN SRKTDKASML DEVIEYLKQL QAQVQMMSAT 240 RNINSLPQMM MMPIGVTPQQ QLQMSLFSRI SGGVGLGLGM GMAGIGAGMG VLDMSSMARG 300 PAQPPGLSPL LHPTSAQFVV PTTHPMTSAQ APAATGNSGS LHFPDPYCAL IAQNMNDIEL 360 YRKMAALYRQ QAATNPSSKT NEGKRE

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MPKAVWSNND TLESIVRQAS NHNQYHVSNV ATNDVNPTCV NKGSCSVDKK PDKLVKTNSG  60
RTRSENITAP VLKKRVRSES EQCRTTSNNL FSTSSGYRNN DQEERKVKIT DHRSMCASAS  120
ATFGREDRDT TMMTWPSFDS SRSFKTNQTT DDDSAASPGG SEEDQETKTE TGRSLSSRQT  180
RAAAIHNQSE RRRRDRINQK MKTLQRLVPN SRKTDKASML DEVIEYLKQL QAQVQMMSAT  240
RNINSLPQMM MMPIGVTPQQ QLQMSLFSRI SGGVGLGLGM GMAGIGAGMG VLDMSSMARG  300
PAQPPGLSPL LHPTSAQFVV PTTHPMTSAQ APAATGNSGS LHFPDPYCAL IAQNMNDIEL  360
YRKMAALYRQ QAATNPSSKT NEGKRE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	195	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61270.2	2e-33	bHLH family protein