PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM90330.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family C3H
Protein Properties Length: 311aa    MW: 34973.6 Da    PI: 7.2208
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM90330.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.6e-081535526
                --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                +C f+++ G+C yG+rC++ H+
  OWM90330.1 15 ICTFYQK-GICLYGSRCRYEHV 35
                7******.***********997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MLRSFLHLHC LSLQICTFYQ KGICLYGSRC RYEHVKPSQV DSHSISSSSN THSISPRDAV  60
AQAWPPSIAS HGANSVCSDE ESSSSYKSLG PPTTPAWNNL DVQREDYYEA EDDVLESRKN  120
VDPADRPLCS YAAVGNCPRG MTCPHIHGDS CPICGKHCLH PFRPQEREEH MDTCQKRQKQ  180
LEALQLSQEI ECSVCLEPIL SKPTAAERKF GILSECDHPF CITCIRNWRS SSPTPGMDVN  240
SALRACPICR KLSYFIIPSV IWYTTKEEKQ EIIESYKAKL KSIDCKHFDY GSGSCPFGTS  300
CFYKVCKHQS C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.11e-109C3H family protein