PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM90181.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 439aa MW: 47165.9 Da PI: 9.9498

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM90181.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00042	195	217	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C++ F +++L+ H+ + H OWM90181.1 195 SCPECSEIFMKPESLELHQAVkH 217 8******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
MAKTTKTVRK TIEKCPNKAS GHQSQKLGRT HSWTSVRGIL SCRNQNPKQQ VVELKPIEEP 60 VVSGGPANAS KKCKKMRCSG SLCSNTKVMH RPLETSPSAP SSSSTPTGNG AAHKKRSLSS 120 VVSSSNFTAP ASASAPSSLS ASFNSSATTG AGAGAGSFRG GNRMNLRRFS GCYECRMVVD 180 PLVTRDPSLR STICSCPECS EIFMKPESLE LHQAVKHAVS ELSPEDTSKN IVEIIFQSSW 240 LKKQTPICKI DHILKVRNTQ KTISKFEEYR DQIKSKASKF AKKQSQFPRC VADGNELLRF 300 HCTTFSCPLG LDGSTSLCCN NMSAASRCNV CSIIKNGFKV AGAGGADVKG ILTTATSGRA 360 HDRASGWAAG DAGRAMLVCR VIAGRVKKSN NCAGEVGNNL LEEYDSVGGA VGVYSNLDEL 420 YVFNPRAILP CFVVIYRWF

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

MAKTTKTVRK TIEKCPNKAS GHQSQKLGRT HSWTSVRGIL SCRNQNPKQQ VVELKPIEEP  60
VVSGGPANAS KKCKKMRCSG SLCSNTKVMH RPLETSPSAP SSSSTPTGNG AAHKKRSLSS  120
VVSSSNFTAP ASASAPSSLS ASFNSSATTG AGAGAGSFRG GNRMNLRRFS GCYECRMVVD  180
PLVTRDPSLR STICSCPECS EIFMKPESLE LHQAVKHAVS ELSPEDTSKN IVEIIFQSSW  240
LKKQTPICKI DHILKVRNTQ KTISKFEEYR DQIKSKASKF AKKQSQFPRC VADGNELLRF  300
HCTTFSCPLG LDGSTSLCCN NMSAASRCNV CSIIKNGFKV AGAGGADVKG ILTTATSGRA  360
HDRASGWAAG DAGRAMLVCR VIAGRVKKSN NCAGEVGNNL LEEYDSVGGA VGVYSNLDEL  420
YVFNPRAILP CFVVIYRWF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	6e-86	C2H2 family protein