PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM89823.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 465aa MW: 50570.6 Da PI: 7.9265

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM89823.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	86	108	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C k F r nL+ H r H OWM89823.1 86 YICEVCLKGFQRDQNLQLHRRGH 108 89*******************88 PP
2	zf-C2H2	13.2	0.00027	162	184	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + OWM89823.1 162 WKCDKCSKRYAVQSDWKAHTKIC 184 58*****************9987 PP
3	zf-C2H2	11.1	0.0013	192	210	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++++H + OWM89823.1 192 DCGTIFSRKDSFVTHRAFC 210 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MSNYVQDFED DEQFQSTVVA SQSSNGSPTN TSVTEAATDH ASTPAPPPSR KKRNLPGNPG 60 KEFNPLYPDA EVVALSPRTL MATNRYICEV CLKGFQRDQN LQLHRRGHNL PWKLKQRPST 120 QPKKRVYICP EPSCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH 180 TKICGTREYR CDCGTIFSRK DSFVTHRAFC DALTEENNKM MMMSQRSHLA ASAGAGGIPQ 240 SQTQELFTSS LTTADSSTTT ADAAPNTFTN LFGNNNNPLM TPPLSLNPTG LMMMPSSLDP 300 FSHRAQKAFG NASLSITSVY TSATALLQKA AEMGAKISDN AIAPILLKGF SGYSTNNTEA 360 VMADNNSDNN SNGFHKTMDT ESSIPIHHQQ IGVGLLPSNA ESLAGNGLLQ GGGGEIFMGE 420 GEKMTVDFLG VDPDGMNARG GVGGVGTKRS FHDDQQNLES FHSGW

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MSNYVQDFED DEQFQSTVVA SQSSNGSPTN TSVTEAATDH ASTPAPPPSR KKRNLPGNPG  60
KEFNPLYPDA EVVALSPRTL MATNRYICEV CLKGFQRDQN LQLHRRGHNL PWKLKQRPST  120
QPKKRVYICP EPSCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH  180
TKICGTREYR CDCGTIFSRK DSFVTHRAFC DALTEENNKM MMMSQRSHLA ASAGAGGIPQ  240
SQTQELFTSS LTTADSSTTT ADAAPNTFTN LFGNNNNPLM TPPLSLNPTG LMMMPSSLDP  300
FSHRAQKAFG NASLSITSVY TSATALLQKA AEMGAKISDN AIAPILLKGF SGYSTNNTEA  360
VMADNNSDNN SNGFHKTMDT ESSIPIHHQQ IGVGLLPSNA ESLAGNGLLQ GGGGEIFMGE  420
GEKMTVDFLG VDPDGMNARG GVGGVGTKRS FHDDQQNLES FHSGW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-107	C2H2 family protein