PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM89812.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

Trihelix

Protein Properties

Length: 324aa MW: 35837.4 Da PI: 6.8213

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM89812.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	79.5	4.7e-25	32	127	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt..sessstcpyfdql 85 rWt+qe+l+Li+++r e rlr ++ l +p+W+ vs+++r++g++r+p qC+++w+nl++++kki+e+e + + + ++s +++ +++ OWM89812.1 32 RWTRQEILVLIQGKRVAEGRLRGRRagraasgggLVEPKWALVSSYCRRHGVNRGPLQCRKRWSNLSGDFKKIREWEARVRagEAAESFWAMRNDM 127 8*****************99543345566666******************************************985224444556665555 PP

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence
MEPEQQLSLG TAEGDGGGNG GDDSVKAARL PRWTRQEILV LIQGKRVAEG RLRGRRAGRA 60 ASGGGLVEPK WALVSSYCRR HGVNRGPLQC RKRWSNLSGD FKKIREWEAR VRAGEAAESF 120 WAMRNDMRRG RKLPGFFDRE VFDILDHRAE VPAPPLALAR APAAAEEAEE VIFDSGRKVV 180 AEDGLFSDFE QEQGGASSPR DEAEAEAEAE VAAIPTPIPL RISTRITGML DENLTSAAPE 240 SKRRPEEGRK RKRPVAEAGD EETLGLQHRL IDLLEKNSRL LTDQLEVQDR NSKLDRDLRK 300 DQADGLLGVL NKLADALVKI ADRL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	242	253	KRRPEEGRKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-52	Trihelix family protein