PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM89811.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

ARF

Protein Properties

Length: 814aa MW: 90830.7 Da PI: 6.4793

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM89811.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.9	1.8e-23	140	241	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++ +++a+e+ + k++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F + +++el+ OWM89811.1 140 FCKTLTASDTSTHGGFSVLRRHADEClppldmS-KQPPTQELVAKDLHGTEWRFRHIFRGQPRRHLLQSGWSLFVSSKKLVAGDAFIFL--RGENGELR 235 99***************************63.4445569********************************************..449999 PP EEEE-S CS B3 94 vkvfrk 99 v+v+r+ OWM89811.1 236 VGVRRA 241 ***996 PP
2	Auxin_resp	119.6	2.5e-39	266	348	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+++F+v+Y+Pr+s++eF+++++k+++a+kv++s+GmRfkm+fe+e+++e+r+sGtvvg+ d+d vrWp+SkWr+Lk OWM89811.1 266 AWHAISTGTMFTVYYKPRTSPAEFIIPFDKYMEATKVNYSIGMRFKMKFEGEEAPEQRFSGTVVGIDDADHVRWPGSKWRCLK 348 89*******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 814 aa Download sequence
MVSPEGSIMI RADRREESGS EDALYKELWH ACAGPLVTVP RAGELVYYFP QGHIEQIEAS 60 TNQSSDQKMP AYDLPSKILC RVICVLLKAE PDTDELFAQV TLLPEPNVGS LFQFSCEQDE 120 NMLVKESALP PAPRPRVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD MSKQPPTQEL 180 VAKDLHGTEW RFRHIFRGQP RRHLLQSGWS LFVSSKKLVA GDAFIFLRGE NGELRVGVRR 240 AMRQPNNIPS SIMPSHSMHI GVLATAWHAI STGTMFTVYY KPRTSPAEFI IPFDKYMEAT 300 KVNYSIGMRF KMKFEGEEAP EQRFSGTVVG IDDADHVRWP GSKWRCLKVR WDEISSIHRP 360 ERVSPWNVEP ATVAPQPPPS SRMKRPRGSM VPSTDSSVLA REGSSRIIVD DPAEKGFVKA 420 LQGQEVPSLK DMLALNNDSE TVEIPSGRAA FQSDDPINCG QGKLRPETWA PPVMPESRMN 480 LISDSPTMHT PYRVFPPFSY KTDDIMADPL KKRDSASESK GNLQNLHSLM HSSPSLNLLG 540 SNMAVPVEVE KKQPQIYVRC GTFAGYNSIH GLGSEHRPGN WLRPLLSPKF AEDLNPPKTR 600 QSNSPFMQQL HTSNGGGGCK LFGISLDSSP VGGEAVRARA PLQRVNLDSN GSQNPESDQH 660 KEVSKFTEGA STCDDPGKAF ESPEQTFRDT QGKQQASFTR SCVKVHKQGI AVGRSVDLSK 720 FSGYSELIAE LDRIFEFNGE LVVPNKNWLV VFTDDEGDMM LVGDDPWQEF CGMVRKIFVY 780 TKEEVKRMVP PHSNPEIEEY PLNGTDWEDN PADH

Sequence ? help Back to Top

Protein Sequence Length: 814 aa Download sequence

MVSPEGSIMI RADRREESGS EDALYKELWH ACAGPLVTVP RAGELVYYFP QGHIEQIEAS  60
TNQSSDQKMP AYDLPSKILC RVICVLLKAE PDTDELFAQV TLLPEPNVGS LFQFSCEQDE  120
NMLVKESALP PAPRPRVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD MSKQPPTQEL  180
VAKDLHGTEW RFRHIFRGQP RRHLLQSGWS LFVSSKKLVA GDAFIFLRGE NGELRVGVRR  240
AMRQPNNIPS SIMPSHSMHI GVLATAWHAI STGTMFTVYY KPRTSPAEFI IPFDKYMEAT  300
KVNYSIGMRF KMKFEGEEAP EQRFSGTVVG IDDADHVRWP GSKWRCLKVR WDEISSIHRP  360
ERVSPWNVEP ATVAPQPPPS SRMKRPRGSM VPSTDSSVLA REGSSRIIVD DPAEKGFVKA  420
LQGQEVPSLK DMLALNNDSE TVEIPSGRAA FQSDDPINCG QGKLRPETWA PPVMPESRMN  480
LISDSPTMHT PYRVFPPFSY KTDDIMADPL KKRDSASESK GNLQNLHSLM HSSPSLNLLG  540
SNMAVPVEVE KKQPQIYVRC GTFAGYNSIH GLGSEHRPGN WLRPLLSPKF AEDLNPPKTR  600
QSNSPFMQQL HTSNGGGGCK LFGISLDSSP VGGEAVRARA PLQRVNLDSN GSQNPESDQH  660
KEVSKFTEGA STCDDPGKAF ESPEQTFRDT QGKQQASFTR SCVKVHKQGI AVGRSVDLSK  720
FSGYSELIAE LDRIFEFNGE LVVPNKNWLV VFTDDEGDMM LVGDDPWQEF CGMVRKIFVY  780
TKEEVKRMVP PHSNPEIEEY PLNGTDWEDN PADH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62000.4	0.0	ARF family protein