PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM89807.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

CO-like

Protein Properties

Length: 464aa MW: 50712.4 Da PI: 6.5069

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM89807.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.2	2.6e-06	14	47	3	36
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg 36 ++ C+ ++++ + l+C+ ++ lC C + H+ OWM89807.1 14 APPCDFCSDQAAVLYCRADSARLCLLCDHHVHSA 47 689**************************99954 PP
2	zf-B_box	26.1	1.7e-08	57	101	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+++ +++++ C++++ llC+dC H + H++ p OWM89807.1 57 SQICDNCASEPASVRCRTDNLLLCQDCDWDAHGScststpHDRAP 101 579*************************99994488888887766 PP
3	CCT	65.4	1.7e-22	416	459	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++ OWM89807.1 416 RGNAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKST 459 7789**************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MAIPNSAAGD GRDAPPCDFC SDQAAVLYCR ADSARLCLLC DHHVHSANLL SRKHLRSQIC 60 DNCASEPASV RCRTDNLLLC QDCDWDAHGS CSTSTPHDRA PIDAFSGVPS AIELASLWEL 120 DLEEEKRPSQ GAIEGQLLED VLLPFGFQEL IVPSENVVVG YHNGSNFGEI VSVMKKQNPS 180 CGKHRQVMQK QLAELSRRGL VDGGVGDTLV PGTPAGTDTW RENVEGMNGA DAVQQLPEPT 240 VAVAVVTSAS QRDQRDSGGD DRDRARDGNP NHRAQTPQIW DFNLGQSRGQ NEPDHFGYGK 300 NEEGFMIMSY GELMQESSSA KVFGNAFQMN CHVAPEDMAF FNDNLNSLAL SQGAATSESN 360 NLPVPRASSV SSLEKAKGPS GSRYYQLAGQ TTTVKNDSGR TAAKTKSDME LLAQNRGNAM 420 LRYKEKKKTR RYDKHIRYES RKARADTRKR VKGRFVKSTE ASDG

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MAIPNSAAGD GRDAPPCDFC SDQAAVLYCR ADSARLCLLC DHHVHSANLL SRKHLRSQIC  60
DNCASEPASV RCRTDNLLLC QDCDWDAHGS CSTSTPHDRA PIDAFSGVPS AIELASLWEL  120
DLEEEKRPSQ GAIEGQLLED VLLPFGFQEL IVPSENVVVG YHNGSNFGEI VSVMKKQNPS  180
CGKHRQVMQK QLAELSRRGL VDGGVGDTLV PGTPAGTDTW RENVEGMNGA DAVQQLPEPT  240
VAVAVVTSAS QRDQRDSGGD DRDRARDGNP NHRAQTPQIW DFNLGQSRGQ NEPDHFGYGK  300
NEEGFMIMSY GELMQESSSA KVFGNAFQMN CHVAPEDMAF FNDNLNSLAL SQGAATSESN  360
NLPVPRASSV SSLEKAKGPS GSRYYQLAGQ TTTVKNDSGR TAAKTKSDME LLAQNRGNAM  420
LRYKEKKKTR RYDKHIRYES RKARADTRKR VKGRFVKSTE ASDG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	3e-94	CO-like family protein