PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM89780.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

SBP

Protein Properties

Length: 389aa MW: 41945.7 Da PI: 8.595

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM89780.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.7	5.2e-41	91	167	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe hsk+p+v+++g+eqrfCqqCsrfh+l efD++krsCr+rL++hn+rrrk+q+ OWM89780.1 91 CLVDGCNSDLSKCRDYHRRHKVCELHSKTPKVTIRGQEQRFCQQCSRFHSLGEFDDGKRSCRKRLDGHNRRRRKSQP 167 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MGYNFPATID LVQVEKKGTL QIASIVNSCN QEPQRTQDAL SVGLKLGSWS CVEEGPVQQS 60 QNPGFTVMEP PSCGSSKRAR APNNGSQVPS CLVDGCNSDL SKCRDYHRRH KVCELHSKTP 120 KVTIRGQEQR FCQQCSRFHS LGEFDDGKRS CRKRLDGHNR RRRKSQPDPS LSSSRFLANY 180 QGTKFVPVSS SQIFPASALG ACPWAGAVKS ENDPVLYSSS SSSSSHPQQL NVSDRKMLFS 240 ASSPHGYRPQ FQFPFMPGNK DVTGGTSVCE PTLSPNPVSG NNSGCSSQKM LPSCLVGALS 300 NSECALSLLS SPLPAAAHQK GVGTTMQFDP QEPSHSSMPA LHYNRVGTGE PTSSFLASPG 360 SLHGMFRSGQ DESSASGSQS HHTPSFTWE

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MGYNFPATID LVQVEKKGTL QIASIVNSCN QEPQRTQDAL SVGLKLGSWS CVEEGPVQQS  60
QNPGFTVMEP PSCGSSKRAR APNNGSQVPS CLVDGCNSDL SKCRDYHRRH KVCELHSKTP  120
KVTIRGQEQR FCQQCSRFHS LGEFDDGKRS CRKRLDGHNR RRRKSQPDPS LSSSRFLANY  180
QGTKFVPVSS SQIFPASALG ACPWAGAVKS ENDPVLYSSS SSSSSHPQQL NVSDRKMLFS  240
ASSPHGYRPQ FQFPFMPGNK DVTGGTSVCE PTLSPNPVSG NNSGCSSQKM LPSCLVGALS  300
NSECALSLLS SPLPAAAHQK GVGTTMQFDP QEPSHSSMPA LHYNRVGTGE PTSSFLASPG  360
SLHGMFRSGQ DESSASGSQS HHTPSFTWE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-48	SBP family protein