PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM89732.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

Trihelix

Protein Properties

Length: 392aa MW: 44230.6 Da PI: 6.4373

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM89732.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.1	8.4e-27	80	162	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e+++Li +rr+m++ ++++k++k+lW+++s kmre+gf rsp++C++kw+nl k++kk k +++ + s +++y+++++ OWM89732.1 80 WVQDETRCLISLRRDMDSLFNTSKSNKHLWDQISGKMREKGFDRSPTMCTDKWRNLLKEFKKAKYHDRAG--SGSAKMSYYKEID 162 ******************************************************************98..45558***997 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MYLSEKPRPI DFYKAEESSS APRDMIIEAV LPSSASNGDL PPPPQHHMIL ADSDGDPDGK 60 SASAAAAAPS VAPKKRAETW VQDETRCLIS LRRDMDSLFN TSKSNKHLWD QISGKMREKG 120 FDRSPTMCTD KWRNLLKEFK KAKYHDRAGS GSAKMSYYKE IDEILRERSK NAQYKSPTPS 180 STKVDSFMQF SDKGMEDTGI SFGPVEASGR PTLNLDRRLD HDGHPLAITP ADAVAANGVP 240 PWNWRETPGS GGESQSYGGR VIAVKWGDYT RRIGIDGSAE SIKEAIRCAF RLRTKRAFWL 300 EDEDQIVRSL DRDMPLGNYI LHLDEGLAIK VCVYDESDHI PVHTEDKIFY TEDDYRYFLV 360 RRGWTGLREF DGYRTIDSMD DLRPGAIYRG VT

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MYLSEKPRPI DFYKAEESSS APRDMIIEAV LPSSASNGDL PPPPQHHMIL ADSDGDPDGK  60
SASAAAAAPS VAPKKRAETW VQDETRCLIS LRRDMDSLFN TSKSNKHLWD QISGKMREKG  120
FDRSPTMCTD KWRNLLKEFK KAKYHDRAGS GSAKMSYYKE IDEILRERSK NAQYKSPTPS  180
STKVDSFMQF SDKGMEDTGI SFGPVEASGR PTLNLDRRLD HDGHPLAITP ADAVAANGVP  240
PWNWRETPGS GGESQSYGGR VIAVKWGDYT RRIGIDGSAE SIKEAIRCAF RLRTKRAFWL  300
EDEDQIVRSL DRDMPLGNYI LHLDEGLAIK VCVYDESDHI PVHTEDKIFY TEDDYRYFLV  360
RRGWTGLREF DGYRTIDSMD DLRPGAIYRG VT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein