PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM89379.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 209aa MW: 23851.2 Da PI: 8.7109 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.3 | 1.3e-20 | 17 | 63 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 krie++ r vtfskRr gi KKA+EL +LC+aev v+ifs++gk + OWM89379.1 17 KRIEDDDDRLVTFSKRRSGIYKKASELVTLCGAEVGVVIFSPRGKPF 63 79******************************************955 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence |
MEGTVKKTRG KQKIEMKRIE DDDDRLVTFS KRRSGIYKKA SELVTLCGAE VGVVIFSPRG 60 KPFSFGHPSI QAVANRFLNR NITSVSDHKI QTMVDAHQRM RMDQNVEYLN QLVDLLDAEK 120 NRGKTLSRIA RATREGRSHA HWELGWWEQP LDELSLHELK KVALSMEAFY RDLRNCLNHP 180 IDVASLSLPN PMADLTAIDD PANVKEVQD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-37 | M-type_MADS family protein |