PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM88879.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family GATA
Protein Properties Length: 335aa    MW: 36271.4 Da    PI: 6.6205
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM88879.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.15.8e-19254288135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  OWM88879.1 254 CSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRL 288
                 *******************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MECVEAAALK TSLRRDSFGG RGSPHPQAFF VDEFNAPAPC GVPSDDFSVD ELLDFSNENG  60
FVDEGKEEEE RRVQDGEAEQ SNNDGKASVS GFCEMDDFPA VPAGDLSVPA DDAADLEWLS  120
HFVEDSSEYS APFPAGMLPE KPRSHQGSEN WAKPEKPGSE RPYFTTPVPA KARSKRARTG  180
GWVWSLGSPS LSESSATSSS SSSTTSSSPS SPWLLCTNFG LIEPVYGKPP AKKPKRKLKQ  240
PAQGPGMGQP PRRCSHCGVQ KTPQWRAGPL GAKTLCNACG VRFKSGRLLP EYRPACSPTF  300
SSELHSNHHR KVLEMRRKKE MLSGPPESAL AVPSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234240PKRKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-72GATA family protein