PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM88332.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

GATA

Protein Properties

Length: 541aa MW: 59455.7 Da PI: 6.6748

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM88332.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.9	4.3e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ OWM88332.1 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 **************88888*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLLNYTPLHA RAEPEEIEDK 60 RTVAMKSMSL NTKDKEVKLL KRKQEGENLV IGGAIPDYGH NFQKGIVDED TSNRSSSGSA 120 VSNSESCAQF GGPEGSDLTG PAQSVVWDTM VPSRKRTCVN RPPKQSPVEK LTRDLYTILQ 180 EQQSSCFSGT SEEDLLLESE TPMVSVEIGH GSVLFRHPNE IVREKEHVSL LFRSPKSVVR 240 EEESEASSLS VENKLCRTND VYSLPIHKNS KGPANAGAEI FKGPPGHGME QGNLKREKSQ 300 HEKGHVLSNR NSPLCHVDLS DVANFEEFAT HLSYEEQQQL SKLLPAIDVS NPPESLKEMF 360 GSLEFKENLT SFQQLLAEGV FDVSLSGEEA EDYKALRKLA LFSSAKCKWV ELRYRLKEGK 420 SSSGGPRVIG PQSSVTSKLG NGKRSEGIQR PNYPDVKVTT KNPKKVAMKG GFENKEGGMD 480 SDSSCFSPKN LFAVPSDGNS FLLHSLHPTD ENSEQDLLLD VPSNSSFPQA ELLHPSRSLG 540 S

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLLNYTPLHA RAEPEEIEDK  60
RTVAMKSMSL NTKDKEVKLL KRKQEGENLV IGGAIPDYGH NFQKGIVDED TSNRSSSGSA  120
VSNSESCAQF GGPEGSDLTG PAQSVVWDTM VPSRKRTCVN RPPKQSPVEK LTRDLYTILQ  180
EQQSSCFSGT SEEDLLLESE TPMVSVEIGH GSVLFRHPNE IVREKEHVSL LFRSPKSVVR  240
EEESEASSLS VENKLCRTND VYSLPIHKNS KGPANAGAEI FKGPPGHGME QGNLKREKSQ  300
HEKGHVLSNR NSPLCHVDLS DVANFEEFAT HLSYEEQQQL SKLLPAIDVS NPPESLKEMF  360
GSLEFKENLT SFQQLLAEGV FDVSLSGEEA EDYKALRKLA LFSSAKCKWV ELRYRLKEGK  420
SSSGGPRVIG PQSSVTSKLG NGKRSEGIQR PNYPDVKVTT KNPKKVAMKG GFENKEGGMD  480
SDSSCFSPKN LFAVPSDGNS FLLHSLHPTD ENSEQDLLLD VPSNSSFPQA ELLHPSRSLG  540
S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-134	GATA family protein