PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM87660.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 426aa MW: 48688.8 Da PI: 8.6927

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM87660.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.9	2.4e-08	19	62	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W+ Ed+l+ +a ++ + +W++Ia +++ gR++ ++++++ OWM87660.1 19 GWSRFEDKLFEQALVVFPEElpdRWRRIAGELP-GRSPVEVREHY 62 69999***********99*********.********9 PP
2	Myb_DNA-binding	47.6	3.8e-15	119	163	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + k++G+g+W++I+r + +Rt+ q+ s+ qky OWM87660.1 119 PWTEEEHRLFLVGLKKYGKGDWRSISRNVVVTRTPTQVASHAQKY 163 8*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MYKETPPPSW PESNRPRTGW SRFEDKLFEQ ALVVFPEELP DRWRRIAGEL PGRSPVEVRE 60 HYEALVHDVS EIDSGRVELP SYADESAEGG LAEGWDPAGQ ISFGSKPKHG DVERKKGTPW 120 TEEEHRLFLV GLKKYGKGDW RSISRNVVVT RTPTQVASHA QKYFLRQTSG KKERKRSSIH 180 DITTADSNLV SAPVDQNWIS GMGSQGQEQF PAPNQLPDQE FSWEDVKVDK HRENYLGHSI 240 RAPVGRWQKG KDLHWYARDK SGNSSDAEAV KEEIRRVKEQ EEQAMREALG LAPKRAPRPQ 300 GNRLDKHEFK ELVKRGSTAE DLGGGHAEAA HVLGLGHSRL PQPWEESSAL ESSEKEASFD 360 MASVAAPEAS GRKSESDESE DERGSKKRRR EEKKRDKHEK REKRHSRDAE DKRQRKHKEK 420 RRHDSD

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MYKETPPPSW PESNRPRTGW SRFEDKLFEQ ALVVFPEELP DRWRRIAGEL PGRSPVEVRE  60
HYEALVHDVS EIDSGRVELP SYADESAEGG LAEGWDPAGQ ISFGSKPKHG DVERKKGTPW  120
TEEEHRLFLV GLKKYGKGDW RSISRNVVVT RTPTQVASHA QKYFLRQTSG KKERKRSSIH  180
DITTADSNLV SAPVDQNWIS GMGSQGQEQF PAPNQLPDQE FSWEDVKVDK HRENYLGHSI  240
RAPVGRWQKG KDLHWYARDK SGNSSDAEAV KEEIRRVKEQ EEQAMREALG LAPKRAPRPQ  300
GNRLDKHEFK ELVKRGSTAE DLGGGHAEAA HVLGLGHSRL PQPWEESSAL ESSEKEASFD  360
MASVAAPEAS GRKSESDESE DERGSKKRRR EEKKRDKHEK REKRHSRDAE DKRQRKHKEK  420
RRHDSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	414	421	QRKHKEKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	2e-77	MYB family protein