PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM87635.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

Trihelix

Protein Properties

Length: 479aa MW: 54763.1 Da PI: 6.5646

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM87635.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.5	1e-29	118	203	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r+++++++++++ k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea OWM87635.1 118 RWPRQETLTLLEIRSSLDSKFKEANHKGPLWDEVSRIMsEEHGYHRSGKKCREKFENLYKYYKKTKEGKTGR--QDGKNYRFFRQLEA 203 8***********************************999*************************97..66678*****85 PP
2	trihelix	48.9	1.7e-15	410	477	4	70
trihelix 4 kqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 ++e+ Li++r++++ ++++ g + +lWe +++km g + s+ +Ckekwen++ + ki++g+kk OWM87635.1 410 ESETWSLIQLRTSLDPSFQEcGYSSDGLWEVIAAKMTCLGHNLSAAECKEKWENIKASFSKIADGNKK 477 5799*************97889****************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MDDDQYGLPD LRRLMPPGTH FPAISHPLEP FSLHRNLHLG TALPPPPSSH FGPSIHHHHV 60 VPNINTQYNP PQGISFATGT DPSPSSAPMN SGAAMSPLCG MEPECGERLM DSGSSSSRWP 120 RQETLTLLEI RSSLDSKFKE ANHKGPLWDE VSRIMSEEHG YHRSGKKCRE KFENLYKYYK 180 KTKEGKTGRQ DGKNYRFFRQ LEAIYGESAS SASNRLREAN NNYNWQDQNK LSESLSFSIS 240 NSSHDLETSS SENNEEYHDL SAMAFAMSQS MDKEKKKLLH IDEEGQANES GRRLGWKEKV 300 KAFIDSQMRK LMERQEAWMD NMLKTIEQRE QERAWREIEW RKQETARFDR EHELWAKERA 360 WIEARDAALM EALKKFTAGN EQLISVNLSL SKAQLLPGRD QNQVESNMNE SETWSLIQLR 420 TSLDPSFQEC GYSSDGLWEV IAAKMTCLGH NLSAAECKEK WENIKASFSK IADGNKKAD

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MDDDQYGLPD LRRLMPPGTH FPAISHPLEP FSLHRNLHLG TALPPPPSSH FGPSIHHHHV  60
VPNINTQYNP PQGISFATGT DPSPSSAPMN SGAAMSPLCG MEPECGERLM DSGSSSSRWP  120
RQETLTLLEI RSSLDSKFKE ANHKGPLWDE VSRIMSEEHG YHRSGKKCRE KFENLYKYYK  180
KTKEGKTGRQ DGKNYRFFRQ LEAIYGESAS SASNRLREAN NNYNWQDQNK LSESLSFSIS  240
NSSHDLETSS SENNEEYHDL SAMAFAMSQS MDKEKKKLLH IDEEGQANES GRRLGWKEKV  300
KAFIDSQMRK LMERQEAWMD NMLKTIEQRE QERAWREIEW RKQETARFDR EHELWAKERA  360
WIEARDAALM EALKKFTAGN EQLISVNLSL SKAQLLPGRD QNQVESNMNE SETWSLIQLR  420
TSLDPSFQEC GYSSDGLWEV IAAKMTCLGH NLSAAECKEK WENIKASFSK IADGNKKAD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-84	Trihelix family protein