PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM87194.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

ARF

Protein Properties

Length: 630aa MW: 70894.8 Da PI: 8.2179

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM87194.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.3	1.4e-23	133	221	1	84
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f k+ltpsd++++g +++pk++a+e+ ++++++s l+++d++g +W ++ iyr++++r++lt+GW+ Fv a++L gD+++F + OWM87194.1 133 FSKTLTPSDTSTHGGFSIPKRHADECfptldmsMEIPAQS--LVMKDLQGCRWHFRQIYRGQPRRHLLTTGWSAFVTAKKLVPGDTCIFIR 221 88**************************9986676775..*********************************************83 PP
2	Auxin_resp	99.5	4.6e-33	258	340	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a ha+s +s+F+v+ +P++s+ F+++v++++k+l++++svG Rf+m fe+e++ e+r++Gtvvgv+dld +rWp+SkWr+Lk OWM87194.1 258 AFHAISARSIFTVYCRPWTSSMPFIIPVSQYMKSLENEISVGLRFRMLFESEECVEQRFTGTVVGVEDLDHIRWPGSKWRCLK 340 679******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 630 aa Download sequence
MSTRGAAESS RSRSHINNSS TDLINDELSN ELWKLCAGRL FYVPKVGEKV FYFPQGHIEQ 60 VQAYTNQVGK MEMPRYNVPS MILCEVMHVL LEVEANTDEV FAQITLVPAR TDEPIWIDGN 120 NPPGRPRFRG SFFSKTLTPS DTSTHGGFSI PKRHADECFP TLDMSMEIPA QSLVMKDLQG 180 CRWHFRQIYR GQPRRHLLTT GWSAFVTAKK LVPGDTCIFI RSNLSLSLSL SLSLSRMFTL 240 WLFYFGRDNM HHGVLGSAFH AISARSIFTV YCRPWTSSMP FIIPVSQYMK SLENEISVGL 300 RFRMLFESEE CVEQRFTGTV VGVEDLDHIR WPGSKWRCLK VQWDSRSDIT KHPERVSPWS 360 IELIEPAKRK QDSEVLPAEK RARPPDASLP GTSNSVKNGL WWFLDGHQPK QTGVLQGQEA 420 KGKAVIEPIL QNSVYKLGSD GTLPISESRK QVSYSMHEMF QVLNPYNGKY VNHGTTGKPS 480 CNKLRTFRLF GIDLFEYNPV ELPSLQLANS NGTPSPSSSL VHPGSLSSVS DLPPKSKSCI 540 KVFKRGTSPG RSVDLTRMNG YNELVRELDG LFGFKGSLID GNSGWHVTYT DNEGDVMLIG 600 DDPWHEFVAL VQRLLICPNE EPLRTASGPP

Sequence ? help Back to Top

Protein Sequence Length: 630 aa Download sequence

MSTRGAAESS RSRSHINNSS TDLINDELSN ELWKLCAGRL FYVPKVGEKV FYFPQGHIEQ  60
VQAYTNQVGK MEMPRYNVPS MILCEVMHVL LEVEANTDEV FAQITLVPAR TDEPIWIDGN  120
NPPGRPRFRG SFFSKTLTPS DTSTHGGFSI PKRHADECFP TLDMSMEIPA QSLVMKDLQG  180
CRWHFRQIYR GQPRRHLLTT GWSAFVTAKK LVPGDTCIFI RSNLSLSLSL SLSLSRMFTL  240
WLFYFGRDNM HHGVLGSAFH AISARSIFTV YCRPWTSSMP FIIPVSQYMK SLENEISVGL  300
RFRMLFESEE CVEQRFTGTV VGVEDLDHIR WPGSKWRCLK VQWDSRSDIT KHPERVSPWS  360
IELIEPAKRK QDSEVLPAEK RARPPDASLP GTSNSVKNGL WWFLDGHQPK QTGVLQGQEA  420
KGKAVIEPIL QNSVYKLGSD GTLPISESRK QVSYSMHEMF QVLNPYNGKY VNHGTTGKPS  480
CNKLRTFRLF GIDLFEYNPV ELPSLQLANS NGTPSPSSSL VHPGSLSSVS DLPPKSKSCI  540
KVFKRGTSPG RSVDLTRMNG YNELVRELDG LFGFKGSLID GNSGWHVTYT DNEGDVMLIG  600
DDPWHEFVAL VQRLLICPNE EPLRTASGPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.4	1e-130	ARF family protein