PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM85979.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

SBP

Protein Properties

Length: 1049aa MW: 115942 Da PI: 7.8883

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM85979.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.3	1.3e-39	151	228	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe hsk +++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+qa OWM85979.1 151 MCQVDDCSEDLSSAKDYHRRHKVCEGHSKVAKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQA 228 6**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1049 aa Download sequence
MEEAGAQVAL PIFMHGALSS RFCESPLMAR KRDYPHSQVQ PLNYQAQDLQ HPSDPRANWN 60 LNSWDWDSVR FVAKPVESEI LRLGSVTAEQ KKREGAAANG VPGMLKKGAA RDEDDESLKL 120 NLGGGLKSLE EPVPRPNKRV RSGSPGSNYP MCQVDDCSED LSSAKDYHRR HKVCEGHSKV 180 AKALVGKQMQ RFCQQCSRFH PLSEFDEGKR SCRRRLAGHN RRRRKTQAED ASSRVLSPGA 240 KDTSADANLD IVNLLTAFAR AQGKIEDKSI NSSPVPDREQ ILQILNKINA LALPTDLAAK 300 LASFRNLNGA ASGQAPSDHL TKFSGAISSP STMDLLTVLS ATLLSQKNGQ ITESEKSKVA 360 NFSDQSADPK PMVEINSVGG ERSSSSYHSP NEDSDCHVLE TRTNLPLQLF SSSPENCSLP 420 KLPASRKYFS SGSSNRTEDR SPSSSPVVQR LFPLQSSVEE AIRPETSVIR EVNGNAEMNR 480 ERAHIAPLEL FRDYDKGPGR GLSQGSPYQT GYTSSSGSDH SPSSLSLDTQ ERTVRIMFKL 540 FDKDPSHLPG DLRSQIYNWL SNSPLEMESY IRPGCLVLSI YLSMPCAAWE QLQENLLERL 600 HTLLQGSESS FWKNGRFLVH TGRKFASHND GKIHLIKSWR TSSPELILVS PLALAVGEEI 660 AQLVLQGRNL VDPGTKIHCT YMGGYMSKEI AELTCEKSTC DEIRITGFEI GDGVAAPPSL 720 GRCFIEVENG LKGNSFPLII ADATICSELR TLESELMERK NSSREEVLHF LNELGWLFQR 780 RKDSSTPPDP NHSIRRFKFL VTFSVERDWC YLVKKLLDIF VESNLDESIP TKESLEALSE 840 VQLLNRAVRR GCTKMVELLI NYAVNHGPDA SRTYIFLPNM VGPGGITPLH LAACTSGSTN 900 VIEALTNDPQ EIGLNSWSTL LDASGQSPHS YAAMRNNHSY NELVARKLSN RRDGQISLTI 960 RGFEIVEQEN AGGPQSVRQR VSCGRCSVVA MRPYGTTIKK GPGVLHRPYI HSMLVIAAVC 1020 VCVCLFLRGA PKVGLVAPFK WENLDYGPL

Sequence ? help Back to Top

Protein Sequence Length: 1049 aa Download sequence

MEEAGAQVAL PIFMHGALSS RFCESPLMAR KRDYPHSQVQ PLNYQAQDLQ HPSDPRANWN  60
LNSWDWDSVR FVAKPVESEI LRLGSVTAEQ KKREGAAANG VPGMLKKGAA RDEDDESLKL  120
NLGGGLKSLE EPVPRPNKRV RSGSPGSNYP MCQVDDCSED LSSAKDYHRR HKVCEGHSKV  180
AKALVGKQMQ RFCQQCSRFH PLSEFDEGKR SCRRRLAGHN RRRRKTQAED ASSRVLSPGA  240
KDTSADANLD IVNLLTAFAR AQGKIEDKSI NSSPVPDREQ ILQILNKINA LALPTDLAAK  300
LASFRNLNGA ASGQAPSDHL TKFSGAISSP STMDLLTVLS ATLLSQKNGQ ITESEKSKVA  360
NFSDQSADPK PMVEINSVGG ERSSSSYHSP NEDSDCHVLE TRTNLPLQLF SSSPENCSLP  420
KLPASRKYFS SGSSNRTEDR SPSSSPVVQR LFPLQSSVEE AIRPETSVIR EVNGNAEMNR  480
ERAHIAPLEL FRDYDKGPGR GLSQGSPYQT GYTSSSGSDH SPSSLSLDTQ ERTVRIMFKL  540
FDKDPSHLPG DLRSQIYNWL SNSPLEMESY IRPGCLVLSI YLSMPCAAWE QLQENLLERL  600
HTLLQGSESS FWKNGRFLVH TGRKFASHND GKIHLIKSWR TSSPELILVS PLALAVGEEI  660
AQLVLQGRNL VDPGTKIHCT YMGGYMSKEI AELTCEKSTC DEIRITGFEI GDGVAAPPSL  720
GRCFIEVENG LKGNSFPLII ADATICSELR TLESELMERK NSSREEVLHF LNELGWLFQR  780
RKDSSTPPDP NHSIRRFKFL VTFSVERDWC YLVKKLLDIF VESNLDESIP TKESLEALSE  840
VQLLNRAVRR GCTKMVELLI NYAVNHGPDA SRTYIFLPNM VGPGGITPLH LAACTSGSTN  900
VIEALTNDPQ EIGLNSWSTL LDASGQSPHS YAAMRNNHSY NELVARKLSN RRDGQISLTI  960
RGFEIVEQEN AGGPQSVRQR VSCGRCSVVA MRPYGTTIKK GPGVLHRPYI HSMLVIAAVC  1020
VCVCLFLRGA PKVGLVAPFK WENLDYGPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein