PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM85651.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

Trihelix

Protein Properties

Length: 408aa MW: 45928.7 Da PI: 6.5774

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM85651.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	89.5	3.6e-28	274	358	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++ev+aLi +r+ + +r++++ +k+ Wee+s+ m+ g++rs+k+Ckekwen++k++kk kkr +e+s+ cpyf++l+ OWM85651.1 274 RWPEDEVQALISFRTAVAHRFNASGSKGSVWEEISIGMSNVGYKRSAKKCKEKWENMKKYFKKSMGKGKKR-PENSKACPYFQELD 358 8*************************************************************9999987.9999******97 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MELFDGDRLL HDEGIIPDRL APFPELLCHH QVLAPAAAVI HCPDETDINI NPLCCHNLPP 60 QKLRPIRCTV RSPPDAEGPI AGIGALSGYQ STDVRFFDGP IEFGSGLGEG SGSGKPQPSY 120 EGRVVDDEST QSTSSASDGG GDSSPDIREP ENRKRKKRRT ERKLQPLIET MVMKVMERQE 180 QMHQQLIEMI EKGERERISR EEAWQHQEME RMKREEELRA RETSRSLALI SLIQKMLGQD 240 IPQPSPLNIF RPEERQGETH PNKDVNCGDS VNKRWPEDEV QALISFRTAV AHRFNASGSK 300 GSVWEEISIG MSNVGYKRSA KKCKEKWENM KKYFKKSMGK GKKRPENSKA CPYFQELDIL 360 YGRGIVNSGH IPDITNHEGE HKITGAQEVQ SSINDSMNNL KDGHADSL

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MELFDGDRLL HDEGIIPDRL APFPELLCHH QVLAPAAAVI HCPDETDINI NPLCCHNLPP  60
QKLRPIRCTV RSPPDAEGPI AGIGALSGYQ STDVRFFDGP IEFGSGLGEG SGSGKPQPSY  120
EGRVVDDEST QSTSSASDGG GDSSPDIREP ENRKRKKRRT ERKLQPLIET MVMKVMERQE  180
QMHQQLIEMI EKGERERISR EEAWQHQEME RMKREEELRA RETSRSLALI SLIQKMLGQD  240
IPQPSPLNIF RPEERQGETH PNKDVNCGDS VNKRWPEDEV QALISFRTAV AHRFNASGSK  300
GSVWEEISIG MSNVGYKRSA KKCKEKWENM KKYFKKSMGK GKKRPENSKA CPYFQELDIL  360
YGRGIVNSGH IPDITNHEGE HKITGAQEVQ SSINDSMNNL KDGHADSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	159	NRKRKKRR
2	153	157	RKRKK
3	153	159	RKRKKRR
4	317	325	KRSAKKCKE
5	331	345	KKYFKKSMGKGKKRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	9e-27	Trihelix family protein