PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM85437.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family bHLH
Protein Properties Length: 380aa    MW: 41899 Da    PI: 4.6327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM85437.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.6e-12214257654
                 HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  OWM85437.1 214 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 257
                 589*********************66......****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    
MELSQNVFLE ELLLAPARSN SDWAAAAACF SHEGGGGGVN YEQQFLPHHH QWWNSFDPFE  60
EDPSASSSLT ARPPDQNPLT ATGLVMVSEH SPADDYYSHY SFLDPPPPYT CTVPEVEGST  120
DPTPPPYPFG DPTGCTPPSL VEDHPDALLS SCSNNNNNNN NGIGCCKVED MEQLVDNHSA  180
GSFSMGCCAG DQVSSKSSTP VRPKRLEGQP SKNLMAERRR RKRLNDRLSM LRSIVPKISK  240
MDRTSILGDT IDYMKELLER INKLQDEDME VGTSPLSLMG FSRELKPNEV LVRNSPKFDV  300
EKRDLGTRID ICCATKPGLL LSTVNTLELL GLEIQQCVIS CFNDFSMQAS CSEVTERTVI  360
SPEDIKQALF RNAGYGGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217224ERRRRKRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.16e-78bHLH family protein