PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM85377.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

NF-YC

Protein Properties

Length: 268aa MW: 29818.8 Da PI: 5.8714

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM85377.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	176.9	1.9e-55	86	189	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ql++fw +q iek+tdfknh+lPlarikki+kadedv+misaeaP+++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdiv OWM85377.1 86 QLQTFWGNQyqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPIVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 184 89**9999999********************************************************************************** PP NF-YC 97 prdel 101 pr++l OWM85377.1 185 PREDL 189 987 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence
MFVSWFRMDQ QGHNQPPAMG VVANTAPLPY GTSPYSPPQM GVPPSYAPMV GGPIQSPGQP 60 GGAQLAQHQL AYQQIHQQQQ QQLQQQLQTF WGNQYQEIEK VTDFKNHSLP LARIKKIMKA 120 DEDVRMISAE APIVFARACE MFILELTLRS WNHTEENKRR TLQKNDIAAA ITRTDIFDFL 180 VDIVPREDLK DEVLGVGTVP RGPVGPGDAL PYCYVPPQPG APQVGNPGMF LGKPMMDPTL 240 YGQQQAHPYM GQTTCPETSE QQQSPSDH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	165	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54830.3	1e-78	NF-YC family protein