PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OWM85082.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 190aa MW: 21618.2 Da PI: 4.2949 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.4 | 7.9e-18 | 10 | 51 | 2 | 43 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+s r++tf kR++g+lKKA+EL +LC++e + i+++++ OWM85082.1 10 LITNESTRKTTFRKRKAGLLKKANELTTLCGVEGCAIVYGPN 51 599*************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 190 aa Download sequence |
MGRKKVRLEL ITNESTRKTT FRKRKAGLLK KANELTTLCG VEGCAIVYGP NEPDPHVWPS 60 REEAEQVLTR FKSLPAKKQA KHMMNHEECL DKNLMILEGK VEEGVRQNRD LELEMLLDEL 120 LEEDGNDERL IEMMSLEDMK DLCGFLDKRL EEIPKDDGND GSSHVASSEN LGDGDEDEDI 180 EEEEVSVSDD |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 3 | 25 | RKKVRLELITNESTRKTTFRKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22590.2 | 2e-29 | M-type_MADS family protein |