PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM83143.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | LBD | ||||||||
Protein Properties | Length: 207aa MW: 22636.2 Da PI: 8.757 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 100.5 | 1.6e-31 | 47 | 145 | 2 | 100 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 CaaC+++rr+C+ dC lapyfp ++ +++a +h+lFG n+ k+++++ + er+ a++s++ +++a+ dPv+G++++i++l ++++++++ela+++++ OWM83143.1 47 CAACRHQRRRCEGDCRLAPYFPLSRYEEYASAHRLFGLGNINKIMNSAAHCERQGAAESILAQGRAWNLDPVHGSTEIIRTLLEEIDRHEKELAVVNQH 145 ***********************************************************************************************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence |
MNAQGRGRGR GQDRGRGRGW GGGRGLGRGR GGGRELGRGR ASHHQTCAAC RHQRRRCEGD 60 CRLAPYFPLS RYEEYASAHR LFGLGNINKI MNSAAHCERQ GAAESILAQG RAWNLDPVHG 120 STEIIRTLLE EIDRHEKELA VVNQHLEYYC RGGQGELDPS LAGQSSIVCQ ASPEERGKMK 180 AIDAHQMVNC DYGDPSPSTA GTSKLEL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-25 | LBD family protein |