PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM83140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | LBD | ||||||||
Protein Properties | Length: 192aa MW: 21182.7 Da PI: 8.8694 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97.9 | 9.9e-31 | 32 | 129 | 2 | 99 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 Ca+C+++rr+C+ dC apyfp ++ +++a +h+lFG n++k+++++ + er+ a++s++ +++a+ dPv+G++++i++l q++++++ela++++ OWM83140.1 32 CASCRHQRRRCKGDCKPAPYFPLSRYEEYASAHRLFGLGNITKIMNSAAHCERQGAAESILAQGRAWNLDPVHGSTEIIRTLLDQIDRHEKELAVVNQ 129 **********************************************************************************************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence |
MNAQRRGRGR GRDQGQGGSQ GPRGRAGRHQ TCASCRHQRR RCKGDCKPAP YFPLSRYEEY 60 ASAHRLFGLG NITKIMNSAA HCERQGAAES ILAQGRAWNL DPVHGSTEII RTLLDQIDRH 120 EKELAVVNQY LEYYRQGGQG ELDPSLAGQS SLVCQASLEE RGKMKAIDAH QMVNCDYGDP 180 SPSTAGTSKL EL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-25 | LBD family protein |