PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM82873.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

bHLH

Protein Properties

Length: 547aa MW: 58907 Da PI: 6.7195

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM82873.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52.2	1.1e-16	344	390	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq OWM82873.1 344 VHNLSERRRRDRINEKMRALQELIPHC-----NKADKASMLDEAIEYLKSLQ 390 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence
MSNHCVPDFK MDDDYSIPST ARQKKSTMGE DEIMELLWQN GQVVMQSQRS GKKPLASGFA 60 GELISMDQHQ GVQEQSCQHS HRQQQQQPPP PPPNLFMQED EMASWLLNDT PYDFCSELLY 120 SSASPSVNPN AAAASTATPT TTATTATATG GAVRAPQASE HRQFVPAPRP PIPPIPPIPP 180 IPPSRKLENF GHLSLLSRHR TEESGPSHLN RAVNESTVVD SSDTPGARTR SRASEAFPCE 240 ASRGTVGGGA LAAAAALSSG GGGGEGEATA CEVTVTSSPG GSSASAEPPS QKPPPLPPPE 300 DRKRKAREAD DADYQSEDVD LESAEAKKQA RGSSSAKRSR AAEVHNLSER RRRDRINEKM 360 RALQELIPHC NKADKASMLD EAIEYLKSLQ LQVQMMSMGC SMVPMMFPGV PQYMPHMGMG 420 IGMGMGINRP MMPFPNVLAG SPLSAPGATA HLGPRFPMPA FHMQHVDPSR GGVGLSQQTD 480 PMLSSLMMQN QNQSRIPNFV DPYQQYLSLQ HMQLQPQQNH NQAAQQQGTS KPSTSKGAEN 540 LESPKSG

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence

MSNHCVPDFK MDDDYSIPST ARQKKSTMGE DEIMELLWQN GQVVMQSQRS GKKPLASGFA  60
GELISMDQHQ GVQEQSCQHS HRQQQQQPPP PPPNLFMQED EMASWLLNDT PYDFCSELLY  120
SSASPSVNPN AAAASTATPT TTATTATATG GAVRAPQASE HRQFVPAPRP PIPPIPPIPP  180
IPPSRKLENF GHLSLLSRHR TEESGPSHLN RAVNESTVVD SSDTPGARTR SRASEAFPCE  240
ASRGTVGGGA LAAAAALSSG GGGGEGEATA CEVTVTSSPG GSSASAEPPS QKPPPLPPPE  300
DRKRKAREAD DADYQSEDVD LESAEAKKQA RGSSSAKRSR AAEVHNLSER RRRDRINEKM  360
RALQELIPHC NKADKASMLD EAIEYLKSLQ LQVQMMSMGC SMVPMMFPGV PQYMPHMGMG  420
IGMGMGINRP MMPFPNVLAG SPLSAPGATA HLGPRFPMPA FHMQHVDPSR GGVGLSQQTD  480
PMLSSLMMQN QNQSRIPNFV DPYQQYLSLQ HMQLQPQQNH NQAAQQQGTS KPSTSKGAEN  540
LESPKSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	349	354	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.1	2e-30	bHLH family protein