PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM82486.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

Trihelix

Protein Properties

Length: 560aa MW: 60246.5 Da PI: 7.3178

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM82486.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58	2.5e-18	163	249	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L++a++e+ +l+rg+l++ +Weev++ + r + ++s +qCk+k +nl+kryk +++++ ++ s+s++p+f++le OWM82486.1 163 EWSDAAIACLLDAYSEKFMQLNRGNLRGRDWEEVAATVseRCDKQTKSVEQCKNKVDNLKKRYKLERHRMTNG-GVSVSHWPWFKKLE 249 5***********************************666668899********************99.66778*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence
MASCDDDFSL LGDDPHHSHH PTNPNHHPQL NASHHLHQPY APQRYNAKPA APIQPQQQPP 60 PSPKKLAAAS AGAEVPETGD DYGESAYQDV NPFSADENSN PFNPTGSDPG KSRADLRSDK 120 RKSQDELSDG GTPYSFRKKP AGAGGGSAAA SSGGGEYRKD REEWSDAAIA CLLDAYSEKF 180 MQLNRGNLRG RDWEEVAATV SERCDKQTKS VEQCKNKVDN LKKRYKLERH RMTNGGVSVS 240 HWPWFKKLEE IVGNSLPSKT ATDDEKPLVA SASSARQSKR FAAATPSPAG PINNMKSKSP 300 STPRWRRVVF KISGAALCGS GPNNIDPKVP MLIAREVAIA CRIGVEVAIV VGGSNFFCGE 360 SWVTATGLER CTAYQIGMMA TVMNSVLLQS ALEKIGVQCR VQSAFPMQEV AEPYSRQRAI 420 RHLEKGRVVI FGGIGAGTGN PLFSTDTAAA LRASEIHAEA LVKGTNVDGV YDCNSQDSNV 480 TFEHISFREL AARGATSMDM MALTFCEDNG IPVVVFNLLN PGNISRALCG DQVASSSAGL 540 NNGEFPELKA LAMVCGDSRL

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence

MASCDDDFSL LGDDPHHSHH PTNPNHHPQL NASHHLHQPY APQRYNAKPA APIQPQQQPP  60
PSPKKLAAAS AGAEVPETGD DYGESAYQDV NPFSADENSN PFNPTGSDPG KSRADLRSDK  120
RKSQDELSDG GTPYSFRKKP AGAGGGSAAA SSGGGEYRKD REEWSDAAIA CLLDAYSEKF  180
MQLNRGNLRG RDWEEVAATV SERCDKQTKS VEQCKNKVDN LKKRYKLERH RMTNGGVSVS  240
HWPWFKKLEE IVGNSLPSKT ATDDEKPLVA SASSARQSKR FAAATPSPAG PINNMKSKSP  300
STPRWRRVVF KISGAALCGS GPNNIDPKVP MLIAREVAIA CRIGVEVAIV VGGSNFFCGE  360
SWVTATGLER CTAYQIGMMA TVMNSVLLQS ALEKIGVQCR VQSAFPMQEV AEPYSRQRAI  420
RHLEKGRVVI FGGIGAGTGN PLFSTDTAAA LRASEIHAEA LVKGTNVDGV YDCNSQDSNV  480
TFEHISFREL AARGATSMDM MALTFCEDNG IPVVVFNLLN PGNISRALCG DQVASSSAGL  540
NNGEFPELKA LAMVCGDSRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein