PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM82464.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 289aa MW: 30463.2 Da PI: 8.7989

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM82464.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0011	112	134	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H OWM82464.1 112 YQCKTCNRCFPSFQALGGHRASH 134 9***********99999998887 PP
2	zf-C2H2	13.4	0.00023	193	215	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H OWM82464.1 193 HECSICGAEFTSGQALGGHMRRH 215 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence
MKGKRMKRQR APSPLALTMA CSSSEDRTSS ISQGGRFVAC DNVSSSGTGG RDSSVDRGVE 60 GVGMEEEDMA YCLILLAGGE RVRKPLSPAE PATVSTSASG NGGNKISGVD LYQCKTCNRC 120 FPSFQALGGH RASHKKPRPT VNTYRNEKSL SLAVANPPVV GDTDGSLFMA LSLQIPAGQG 180 APAQNGAGKS KVHECSICGA EFTSGQALGG HMRRHRTLVP AQPTAIGVGP SGNNISFQAQ 240 DTVKNSRNNL HLDLNLPAPE DRESKYSSLT TSKEQVLVFS ASPLVDCYY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	4	10	KRMKRQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	7e-44	C2H2 family protein