PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM82397.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 548aa MW: 59193.5 Da PI: 9.7427

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM82397.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	90	112	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H OWM82397.1 90 FICEICNKGFQREQNLQLHRRGH 112 89*******************88 PP
2	zf-C2H2	12.6	0.00041	167	189	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ OWM82397.1 167 WKCEKCSKKYAVQSDWKAHSKTC 189 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MSGDPFSLPA SIAGFSAEEP NTNPNPKPTA SSTSGAKKRR NLAGTPGKPC ASSFFFYLYL 60 SSTTFWLTSF YPDAEVIALS PKTLMATNRF ICEICNKGFQ REQNLQLHRR GHNLPWKLKQ 120 RTNKDIIRKK VYICPEKTCV HHDPSRALGD LTGVKKHYSR KHGEKKWKCE KCSKKYAVQS 180 DWKAHSKTCG TREYKCDCGT LFSRRDSFIT HRAFCDALAE ESARFTTVTP ANLHFRNDAT 240 SIVNAQSGLP HGFGNRGAQD IAGLNQLGSI LRPDSGGMPL VGNSLGAVQQ QKSRLSLWLN 300 QGNPQLSNPG EILPSSNLFG SSSSSTGLPD MLQMGSANNI FGSSSLPSFG GYNHFPSVSG 360 GLSANLSLSP LKEEVGSKGS IVETPTATYD FPNTQLKPDM SATALLQKAA QLGSTRSNPS 420 SIFGNTFGVM MSPPSSASTS GFNSLIHQNR MNDYDQQLPH LIPNMTKLPD NFGSSHSNLS 480 SITRTSSGLD QAQLKLHQGS NSTDHSSLTR DFLGMSGEAG GPPFSPQDLA KLASMSSAMG 540 LSQFNGNN

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MSGDPFSLPA SIAGFSAEEP NTNPNPKPTA SSTSGAKKRR NLAGTPGKPC ASSFFFYLYL  60
SSTTFWLTSF YPDAEVIALS PKTLMATNRF ICEICNKGFQ REQNLQLHRR GHNLPWKLKQ  120
RTNKDIIRKK VYICPEKTCV HHDPSRALGD LTGVKKHYSR KHGEKKWKCE KCSKKYAVQS  180
DWKAHSKTCG TREYKCDCGT LFSRRDSFIT HRAFCDALAE ESARFTTVTP ANLHFRNDAT  240
SIVNAQSGLP HGFGNRGAQD IAGLNQLGSI LRPDSGGMPL VGNSLGAVQQ QKSRLSLWLN  300
QGNPQLSNPG EILPSSNLFG SSSSSTGLPD MLQMGSANNI FGSSSLPSFG GYNHFPSVSG  360
GLSANLSLSP LKEEVGSKGS IVETPTATYD FPNTQLKPDM SATALLQKAA QLGSTRSNPS  420
SIFGNTFGVM MSPPSSASTS GFNSLIHQNR MNDYDQQLPH LIPNMTKLPD NFGSSHSNLS  480
SITRTSSGLD QAQLKLHQGS NSTDHSSLTR DFLGMSGEAG GPPFSPQDLA KLASMSSAMG  540
LSQFNGNN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	130	KLKQRTNKDIIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-100	C2H2 family protein