PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM82016.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

Trihelix

Protein Properties

Length: 598aa MW: 68855.3 Da PI: 5.4513

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM82016.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40.1	9.7e-13	120	169	2	56
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwen 56 W+++ev aL+++ ++me+++ + We+vs+k++e gf+rs+++Ckek+e+ OWM82016.1 120 WSNEEVVALLRIGSNMENWFPQV-----TWEHVSRKLAELGFKRSAEKCKEKFEE 169 ******************998.....9**********************86 PP
2	trihelix	95.1	6.8e-30	472	564	1	86
trihelix 1 rWtkqevlaLiearr......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 rW+++evlaLi++r e+ ++ ++g+ k+plWe++s++m+e g++rs+k+Ckekwen+nk+++k+k+++ +r +s +s+tcpyf+ql+ OWM82016.1 472 RWPREEVLALINLRCtiqgnnEDSDHHQQGAVKAPLWERISQRMSELGYTRSAKRCKEKWENINKYFRKTKDSNVSRkRSADSRTCPYFHQLN 564 8***********96776666666777789****************************************99679*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence
MFDGVPEQFH QFIASSRASS SPLPLPPQLS AFPFHGFDPF PNPNPTPIPH PPPSPPPLSA 60 SHHQHHLLHL HHPSLLLHHK DVAAEEEEGK ERSLLAMSAN FDIEARVDRS MPEPVDHGPW 120 SNEEVVALLR IGSNMENWFP QVTWEHVSRK LAELGFKRSA EKCKEKFEEQ TRTSFNDDNH 180 NNINININYS KNNNNYRLLV NELEELYDHH HHENPPTPPE QHQQLHEVPQ SNDNDDGNVE 240 KPMEEEDKEE EEEEVGRGGV EGEKMGQNNM EEVDSQAVET TSLAEDEKRL KEEREEDKVA 300 KKRKRWEKFE MFKRFCESVV ERLMAQQEEM HNKLLEDMMR RDREMVEKEE AWKKMEMERL 360 NKELDMRAQE QAVAGNRQAT IIEFLKGFTS PSCEADKDGK DPIPNPRNPT ARVDTEKEPK 420 TPSSTAGPAE DDRPNLTPPP PALVSPNPNS SSTPRNLRTS NTTGECSDTG KRWPREEVLA 480 LINLRCTIQG NNEDSDHHQQ GAVKAPLWER ISQRMSELGY TRSAKRCKEK WENINKYFRK 540 TKDSNVSRKR SADSRTCPYF HQLNALYNQR NKPVPMPEPL ENRPSSPENS PSLQDTTQ

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence

MFDGVPEQFH QFIASSRASS SPLPLPPQLS AFPFHGFDPF PNPNPTPIPH PPPSPPPLSA  60
SHHQHHLLHL HHPSLLLHHK DVAAEEEEGK ERSLLAMSAN FDIEARVDRS MPEPVDHGPW  120
SNEEVVALLR IGSNMENWFP QVTWEHVSRK LAELGFKRSA EKCKEKFEEQ TRTSFNDDNH  180
NNINININYS KNNNNYRLLV NELEELYDHH HHENPPTPPE QHQQLHEVPQ SNDNDDGNVE  240
KPMEEEDKEE EEEEVGRGGV EGEKMGQNNM EEVDSQAVET TSLAEDEKRL KEEREEDKVA  300
KKRKRWEKFE MFKRFCESVV ERLMAQQEEM HNKLLEDMMR RDREMVEKEE AWKKMEMERL  360
NKELDMRAQE QAVAGNRQAT IIEFLKGFTS PSCEADKDGK DPIPNPRNPT ARVDTEKEPK  420
TPSSTAGPAE DDRPNLTPPP PALVSPNPNS SSTPRNLRTS NTTGECSDTG KRWPREEVLA  480
LINLRCTIQG NNEDSDHHQQ GAVKAPLWER ISQRMSELGY TRSAKRCKEK WENINKYFRK  540
TKDSNVSRKR SADSRTCPYF HQLNALYNQR NKPVPMPEPL ENRPSSPENS PSLQDTTQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	1e-58	Trihelix family protein