PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM81535.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

CO-like

Protein Properties

Length: 429aa MW: 45991.2 Da PI: 4.9843

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM81535.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23	1.6e-07	47	90	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42 C+++++++++ C + ++ lC++C +H g H+++++ OWM81535.1 47 LCERCNSQPAIVRCAEEKVSLCHNCDWIGH-GastsgsaHKRQSI 90 7*****************************.55888899988765 PP
2	CCT	62.9	1e-21	372	415	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a++RYkeK+ktRkFeK++rY+sRKa+A+ R+RvKGrFvk+ OWM81535.1 372 RSDAVMRYKEKKKTRKFEKRVRYASRKARADVRKRVKGRFVKAG 415 889**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MGYMCDFCGE QRSMVYCRSD VACLCLSCDR NVHSANALSK RHFRTLLCER CNSQPAIVRC 60 AEEKVSLCHN CDWIGHGAST SGSAHKRQSI DSYSGCPSAA ELSSIWSSVL EVPSVVDTTC 120 EEELGLMSIS ENNLKASSWV GSERNMSLGG GVVEAEKTNV LTGSSSSLPE LKSTSQSLSQ 180 QTTTPMNAPS SKASDGTHTF GAASLSILVC YPTAKGPPLF EDDSLYEDFN MDEVDLNLEN 240 YEELFGVTLN SSEDLLENGG IDSLFSAKEL SAADSNGQGA VLAEGSSAQL VNPQPACSAA 300 SADSMMSSKT DSILCFTSRQ QAHANLSFSG LNGESTGGDY QDCGASSMLL MGEPSWCPPG 360 SAESSLPSAA GRSDAVMRYK EKKKTRKFEK RVRYASRKAR ADVRKRVKGR FVKAGDAYDY 420 DPLSPTRSF

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MGYMCDFCGE QRSMVYCRSD VACLCLSCDR NVHSANALSK RHFRTLLCER CNSQPAIVRC  60
AEEKVSLCHN CDWIGHGAST SGSAHKRQSI DSYSGCPSAA ELSSIWSSVL EVPSVVDTTC  120
EEELGLMSIS ENNLKASSWV GSERNMSLGG GVVEAEKTNV LTGSSSSLPE LKSTSQSLSQ  180
QTTTPMNAPS SKASDGTHTF GAASLSILVC YPTAKGPPLF EDDSLYEDFN MDEVDLNLEN  240
YEELFGVTLN SSEDLLENGG IDSLFSAKEL SAADSNGQGA VLAEGSSAQL VNPQPACSAA  300
SADSMMSSKT DSILCFTSRQ QAHANLSFSG LNGESTGGDY QDCGASSMLL MGEPSWCPPG  360
SAESSLPSAA GRSDAVMRYK EKKKTRKFEK RVRYASRKAR ADVRKRVKGR FVKAGDAYDY  420
DPLSPTRSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	1e-106	CO-like family protein