PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM81483.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | LBD | ||||||||
Protein Properties | Length: 229aa MW: 25029.7 Da PI: 5.9138 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.1 | 7.2e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+++Cv+apyf++eq +++fa++hk+FGasn++kll++lp +r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+la+lk OWM81483.1 7 PCGACKFLRRKCVRGCVFAPYFCHEQgAAHFAAIHKVFGASNISKLLSNLPVGDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVFNLQAQLASLK 105 7*************************89********************************************************************999 PP DUF260 99 ee 100 e+ OWM81483.1 106 EQ 107 87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence |
MTSSGSPCGA CKFLRRKCVR GCVFAPYFCH EQGAAHFAAI HKVFGASNIS KLLSNLPVGD 60 RCEAAVTISY EAQARLQDPI YGCVSHIFAL QQQVFNLQAQ LASLKEQAAQ GLSAMRANTG 120 AERIPTAQQL LDMQSWSQLS NSSSLPQFGF NDISNATNYH GSFSMDSSSN SMGDYKNNVS 180 LLREDNSSFG SFEDASHRSS DVQAGNGQWS FQDATDEFES VAFDYARQW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 9e-67 | LBD family protein |