PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM81280.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 534aa MW: 58160.4 Da PI: 6.3045

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM81280.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.2	1e-14	43	90	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++vk+ G g+W+++ + + R++k+c++rw ++l OWM81280.1 43 KGPWTAAEDAILMEYVKKNGEGNWNAVQKNTSLSRCGKSCRLRWTNHL 90 79*******************************************996 PP
2	Myb_DNA-binding	51.9	1.8e-16	96	139	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l++++++qlG++ W++ a+ ++ gRt++++k++w++ OWM81280.1 96 KGSFTPEEERLILQLHAQLGNK-WARMAAQLP-GRTDNEIKNYWNT 139 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MVAHSGGYQS DDGMLTMPNG SSSASSASGG NAAGMAKQQA LKKGPWTAAE DAILMEYVKK 60 NGEGNWNAVQ KNTSLSRCGK SCRLRWTNHL RPNLKKGSFT PEEERLILQL HAQLGNKWAR 120 MAAQLPGRTD NEIKNYWNTR IKRRIRQGLP LYPNDIASQK PETSPPMQLE AQPAATAPIR 180 GRPPLQIPTR TISQFLAQSH SPSSTPSPVH LSPHSYHQLK TNFTHSLSLF DPASPLSPST 240 SSLSSPHGLH SPHGLPSPHG LPSRHSLPSP HSPTILSPNL VLNSYQDTNA SFPGFSFPQQ 300 TSALQLPTAS SFQFTPLTFN LNSTQGLQTS QPPGTVYTPT KPEELPSYQS YQSQQEKSVL 360 GPEPEPKPDE QETRSKPSLP YSSSMGLLED LLQQAEALTS NENSQDQNNF FQLQDQKSEF 420 SLKSGYAWDD VANGSDSSSA DAGSEIKNEV KDESGSLHED LTALLQSISS PANVLEEYNH 480 LGDNLNIPSL DFGSEDSLGL DMQQIASIFQ VDTASTEISR QAASCPWNNL PRIC

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MVAHSGGYQS DDGMLTMPNG SSSASSASGG NAAGMAKQQA LKKGPWTAAE DAILMEYVKK  60
NGEGNWNAVQ KNTSLSRCGK SCRLRWTNHL RPNLKKGSFT PEEERLILQL HAQLGNKWAR  120
MAAQLPGRTD NEIKNYWNTR IKRRIRQGLP LYPNDIASQK PETSPPMQLE AQPAATAPIR  180
GRPPLQIPTR TISQFLAQSH SPSSTPSPVH LSPHSYHQLK TNFTHSLSLF DPASPLSPST  240
SSLSSPHGLH SPHGLPSPHG LPSRHSLPSP HSPTILSPNL VLNSYQDTNA SFPGFSFPQQ  300
TSALQLPTAS SFQFTPLTFN LNSTQGLQTS QPPGTVYTPT KPEELPSYQS YQSQQEKSVL  360
GPEPEPKPDE QETRSKPSLP YSSSMGLLED LLQQAEALTS NENSQDQNNF FQLQDQKSEF  420
SLKSGYAWDD VANGSDSSSA DAGSEIKNEV KDESGSLHED LTALLQSISS PANVLEEYNH  480
LGDNLNIPSL DFGSEDSLGL DMQQIASIFQ VDTASTEISR QAASCPWNNL PRIC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	146	RIKRRIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55020.1	5e-69	MYB family protein