PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM81079.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

NF-YC

Protein Properties

Length: 264aa MW: 29670.4 Da PI: 5.7197

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM81079.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	176.2	3.3e-55	83	187	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ql+ fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvdi+ OWM81079.1 83 QLQGFWADQmqeIEHTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDII 181 799**9977789********************************************************************************* PP NF-YC 97 prdelk 102 prdelk OWM81079.1 182 PRDELK 187 *975 PP

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence
MDQSEQTQEQ QQQHDQPVMG VIAGTNHHMA YPNPYQTASL VASGAPAASP TQPAATFGNS 60 THELAYQQAQ HFHHQQQQQQ QQQLQGFWAD QMQEIEHTTD FKNHSLPLAR IKKIMKADED 120 VRMISAEAPV IFAKACEMFI LELTLRSWIH TEENKRRTLQ KNDIAAAISR TDVFDFLVDI 180 IPRDELKEEG LGVTKATIPL MGSPADIPYY YVPPQHPVGP PGMIMGKPVD QAALYAAQQP 240 RPPMAFIPWP QSQQQQQAQE KSDA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	162	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.1	1e-80	NF-YC family protein