PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM81031.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 192aa MW: 21416.5 Da PI: 8.9029 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.2 | 4.5e-18 | 29 | 65 | 8 | 44 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 r vtfskRr+g++ KA EL+vLC+a+va++ fs+ OWM81031.1 29 HRRVTFSKRRKGLFEKAAELCVLCGAKVAIVTFSEGR 65 799*******************************865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence |
MADTPKAPPR RSTQGRQKIE IKKREKVDHR RVTFSKRRKG LFEKAAELCV LCGAKVAIVT 60 FSEGRKAFCF GNHETDAMLE GYLNGRNLGE IEPSGAYVRA LNESKQLYLE ASMRLESERA 120 KGKCPVRLAR PEGFWWDTPM DGLGLEELEY YHNALERMMQ IVQAKIEEGS NTGPGPAPGL 180 GFIGTAGEQS LL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 22 | 39 | KKREKVDHRRVTFSKRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 9e-29 | M-type_MADS family protein |