PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM80901.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family BBR-BPC
Protein Properties Length: 330aa    MW: 36686.4 Da    PI: 9.9829
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM80901.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind381.91e-11613301301
   GAGA_bind   1 mdddgsre..rnkg.yye.........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllv 87 
                 mdd+g+re  r+k+ +y+         p++s+     +q+m ++aerda+i+ernlalsekkaa+aerd+a++qrd a+aern+a++erdn++++l+++
  OWM80901.1   1 MDDSGHREngRHKPdQYKpsqgqwlmqPQPSM-----KQIMGLMAERDAAIQERNLALSEKKAAIAERDIAYHQRDIAIAERNNAILERDNAIATLQYR 94 
                 9*****999*********55444444333444.....49************************************************************ PP

   GAGA_bind  88 ensla.......salpvgvqvlsgtksidslqqlse...........pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkk 168
                 en l+       +++p+g+q+++g+k++++ qq+++           +++++++++   ++ +++lp+ + + +++ +k ++ ++r+++pk+  ++ +k
  OWM80901.1  95 ENPLSsggnpmpTSCPPGCQISRGVKHMHHPQQQQQqqqvhhhnhisHHMAENPYG---THPSDSLPTMS-PVTSEGAKPRQGNKRSREPKAMPTT-PK 188
                 **9999999*999*****************99855556666676666666666666...44455555444.3333334444446666666665544.33 PP

   GAGA_bind 169 kksekskkkvkkesader.........skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagr 258
                 k s+ s kkvk+e++d +         sk+++k +dl+ln+v++De+t+P+PvCsCtG++rqCYkWG+GGWqS+CCttt+S+yPLP+++++r+aR++gr
  OWM80901.1 189 KASRPSSKKVKRENEDLNkmmngggdmSKSDWKAQDLGLNQVAFDETTMPPPVCSCTGVPRQCYKWGSGGWQSSCCTTTMSMYPLPAVPNKRHARVGGR 287
                 334555566666666633467777777************************************************************************ PP

   GAGA_bind 259 KmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                 KmS+gaf klL++LaaeG+dls pvDLkdhWAkHGtn+++ti+
  OWM80901.1 288 KMSGGAFGKLLSRLAAEGHDLSSPVDLKDHWAKHGTNRYITIK 330
                 ******************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MDDSGHRENG RHKPDQYKPS QGQWLMQPQP SMKQIMGLMA ERDAAIQERN LALSEKKAAI  60
AERDIAYHQR DIAIAERNNA ILERDNAIAT LQYRENPLSS GGNPMPTSCP PGCQISRGVK  120
HMHHPQQQQQ QQQVHHHNHI SHHMAENPYG THPSDSLPTM SPVTSEGAKP RQGNKRSREP  180
KAMPTTPKKA SRPSSKKVKR ENEDLNKMMN GGGDMSKSDW KAQDLGLNQV AFDETTMPPP  240
VCSCTGVPRQ CYKWGSGGWQ SSCCTTTMSM YPLPAVPNKR HARVGGRKMS GGAFGKLLSR  300
LAAEGHDLSS PVDLKDHWAK HGTNRYITIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-143BBR-BPC family protein