PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM80160.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

bHLH

Protein Properties

Length: 513aa MW: 55093.4 Da PI: 7.848

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM80160.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.3	8.5e-16	322	367	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq OWM80160.1 322 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASVLDEVIEYLKQLQ 367 9**********************8.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MNQCVPNWDL DDNPLPARLS ARSNSNSAPP DVPILDYEVA ELTWENGQLA MHGLGQPRVS 60 LKPQPQQPAS TNNNKYTWDK LPRGTGTGTG TGTLESIVDQ AAAALPNRKR PPQPPPFDDV 120 VPWFNCPGAA TSASMTMDAL VPCTAAATDR QHQKHQEQGI AGTMPLLNES STVPPMCAVG 180 CSTRLDSCSE AAVAAALQAD DARKRARVAA AVQVPVAREW SGRDQYSASG SATMRREMDS 240 QQMTVDTCDR DVCVGLTSTS MGSQDTTSSG ARPCTQATAT ADEHDSICHG RSQREAGDEE 300 DKVKRNRKST VSTKRSRAAA IHNQSERKRR DKINQRMKTL QKLVPNSSKT DKASVLDEVI 360 EYLKQLQAQV QMMSRMNMKP MMLPMAMQQQ LQMSMMAPMG LGMGMGMGMP GVMDMNALTG 420 RPNLPGMPPN GSAPILHPAA AAAPFLPLAP LWDGSGCNGD RLHPSSTAAA PVLADPFAAF 480 LACQSQPMTL DAYSRMAAIY QQLHQPPASS SKN

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MNQCVPNWDL DDNPLPARLS ARSNSNSAPP DVPILDYEVA ELTWENGQLA MHGLGQPRVS  60
LKPQPQQPAS TNNNKYTWDK LPRGTGTGTG TGTLESIVDQ AAAALPNRKR PPQPPPFDDV  120
VPWFNCPGAA TSASMTMDAL VPCTAAATDR QHQKHQEQGI AGTMPLLNES STVPPMCAVG  180
CSTRLDSCSE AAVAAALQAD DARKRARVAA AVQVPVAREW SGRDQYSASG SATMRREMDS  240
QQMTVDTCDR DVCVGLTSTS MGSQDTTSSG ARPCTQATAT ADEHDSICHG RSQREAGDEE  300
DKVKRNRKST VSTKRSRAAA IHNQSERKRR DKINQRMKTL QKLVPNSSKT DKASVLDEVI  360
EYLKQLQAQV QMMSRMNMKP MMLPMAMQQQ LQMSMMAPMG LGMGMGMGMP GVMDMNALTG  420
RPNLPGMPPN GSAPILHPAA AAAPFLPLAP LWDGSGCNGD RLHPSSTAAA PVLADPFAAF  480
LACQSQPMTL DAYSRMAAIY QQLHQPPASS SKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	326	331	ERKRRD
2	327	332	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	2e-68	bHLH family protein