PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM79905.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

AP2

Protein Properties

Length: 551aa MW: 60309.6 Da PI: 7.1893

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM79905.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37.6	5.6e-12	245	301	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++ +e+Aa+a++ a++k++g OWM79905.1 245 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 301 78*****************433.44555535555.779999************98 PP
2	AP2	48.2	2.8e-15	344	395	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g OWM79905.1 344 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 395 78**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence
MYKEKGTKES IFIMTTTNTT IINIIIMMMA SPLCLFDLMV LSALPKVPSG APMEDLIIIR 60 FKSIMDAPST SNESPKLEDF FNSQPPAQND AGFNINVNAP VLGIPAVDGG GRHPFNGVQS 120 SNVLAHPLLS PPFHGLTTTP PGHHPHFDGA TGITSVSGLK SWLRQAAPQH PGERPASSGG 180 CNYQALSLSV NPGAEGSDGG VVAPLEPMVV GGKRSGGDYA SPVAAAAGRE PVPRKSIDTF 240 GQRTSQYRGV TRHRWTGRYE AHLWDNSCRK EGQTRKGRQG GYDKEEKAAR AYDLAALKYW 300 GPTTHINFPL SDYEKELEEM KNMTRQEFVA HLRRKSSGFS RGASVYRGVT RHHQHGRWQA 360 RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGTNAVT NFDISRYDVK RICSSSTLIT 420 SDLAKRGSPP KAALEEYGSC ATMMDPHRQH PIPTTLTGDH CHEPSEELAH MVSSPKTIQR 480 CTLEEGNSSG DFCAGEVYNS QEYFSLEDPT AKYLEDHASD RREPDSSGNR QGSDLGLVQN 540 QVLPMFALWN E

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence

MYKEKGTKES IFIMTTTNTT IINIIIMMMA SPLCLFDLMV LSALPKVPSG APMEDLIIIR  60
FKSIMDAPST SNESPKLEDF FNSQPPAQND AGFNINVNAP VLGIPAVDGG GRHPFNGVQS  120
SNVLAHPLLS PPFHGLTTTP PGHHPHFDGA TGITSVSGLK SWLRQAAPQH PGERPASSGG  180
CNYQALSLSV NPGAEGSDGG VVAPLEPMVV GGKRSGGDYA SPVAAAAGRE PVPRKSIDTF  240
GQRTSQYRGV TRHRWTGRYE AHLWDNSCRK EGQTRKGRQG GYDKEEKAAR AYDLAALKYW  300
GPTTHINFPL SDYEKELEEM KNMTRQEFVA HLRRKSSGFS RGASVYRGVT RHHQHGRWQA  360
RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGTNAVT NFDISRYDVK RICSSSTLIT  420
SDLAKRGSPP KAALEEYGSC ATMMDPHRQH PIPTTLTGDH CHEPSEELAH MVSSPKTIQR  480
CTLEEGNSSG DFCAGEVYNS QEYFSLEDPT AKYLEDHASD RREPDSSGNR QGSDLGLVQN  540
QVLPMFALWN E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-128	AP2 family protein