PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM79835.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | CO-like | ||||||||
Protein Properties | Length: 425aa MW: 46691.2 Da PI: 5.433 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 16.1 | 2.3e-05 | 47 | 72 | 5 | 30 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedCl 30 C+++++++++ C d + lC++C OWM79835.1 47 LCNRCSSQPAIVRCLDEKLSLCQSCD 72 6************************7 PP | |||||||
2 | CCT | 44.2 | 6.8e-16 | 360 | 407 | 1 | 45 |
CCT 1 ReaallRYkeKrkt...RkFeKkirYesRKavAesRpRvKGrFvkqae 45 R++a+ RYkeK++ +F K+irY+sRKa+Ae+R R++GrFvk++e OWM79835.1 360 RDKAKIRYKEKKNCwslDQFGKHIRYASRKARAETRRRIRGRFVKASE 407 888999******962225799************************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence |
MECSCDFCRA ANAVVYCNSD SARLCLHCDG YIHSANSLAS RHSRWFLCNR CSSQPAIVRC 60 LDEKLSLCQS CDWNGLEMGC SGLGHSRQAL EIYTGCPSLA EFSTILASAL NQPPHPSELG 120 EGWGPSDELS CVFENKGTVS FYGTMDRNAF HKQDPWSGHS TGFTSNNHYV LFCKGEAPSA 180 CLDPNPSKVP FCCSEHFKNP GNEDSGAGLV PNLDMDDFPQ MGNSKDVLDC ETDEVLYQFT 240 DEELECLLME KNGPTDNAIE ASSSVQPECA SFQPARIGNL ILGMQGVKGS SSTTDNCMLT 300 NPPYSSIGMG FPTPSMSLPL HNITGESHAI EYQDSGISPM LLSVKSPWDP KPEGSCPQAR 360 DKAKIRYKEK KNCWSLDQFG KHIRYASRKA RAETRRRIRG RFVKASEADD PQGTTNNTSF 420 KEEKS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21880.1 | 5e-55 | CO-like family protein |