PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM79127.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 242aa MW: 26687.4 Da PI: 9.1288 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.8 | 2.4e-22 | 17 | 62 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +n+sn qvtfskRr g++KKA+EL++LC+a++a+i+fs+ +k y + OWM79127.1 17 DNDSNLQVTFSKRRSGLFKKASELCTLCGADIAIIVFSPGDKAYSF 62 8**************************************9999987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence |
MAKTSKGRQK IQMVKMDNDS NLQVTFSKRR SGLFKKASEL CTLCGADIAI IVFSPGDKAY 60 SFGHPCVERV LERFLNGDNN YNPNSDQQIS AGTLQFMEMQ RNTTLRELNH QLGQLLAQLE 120 VEKKRSEELK QMMRVTQVQS RCKGTIDDLS PSELEQLKAS LEELKKNVSR QAERVLAQAA 180 NPPPFFGAAG PNVAGPSAAV IPYDMNNNIG VFNIGGGFSA GGGFNGALIP NIPYNYPFGR 240 YY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-58 | M-type_MADS family protein |