PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM78963.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family C3H
Protein Properties Length: 307aa    MW: 32326 Da    PI: 9.9169
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM78963.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.31.4e-09110135227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 kt+lC+ +     Ck+Gd+C+FaHg+
  OWM78963.1 110 KTRLCNKYNTAEGCKFGDKCHFAHGE 135
                 8***********************96 PP
2zf-CCCH39.41e-12274298126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ykt+lC++fa+ G C +GdrC+FaHg
  OWM78963.1 274 YKTKLCDNFAK-GSCTFGDRCHFAHG 298
                 9**********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MDARKRGRHE GGANNANGGF KKSKQGAVVL WFKRNRAKKC CPMGIVLYRD VNITGCPFGE  60
GCHFLHYVPG GYNAVAQMMN LAPIVSPPSR NAGPLPPLPQ HNASTQPSVK TRLCNKYNTA  120
EGCKFGDKCH FAHGEWELGK PVAPSFDDPR GVGQPPIPGR LGGPPPPSIP GPASSFGASA  180
TAKISVDASL AGAIIGKGGV NSKLICRQTG TKLSIRDHES DPNLRNIELE GTFEQIKQAS  240
TMVRELIMDI GAVGGPPKGG HGLGGPGAPP GSNYKTKLCD NFAKGSCTFG DRCHFAHGAA  300
ELRRTVV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.14e-62C3H family protein