PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM78835.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family LBD
Protein Properties Length: 264aa    MW: 28382.5 Da    PI: 6.9028
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM78835.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601223.2e-38411421101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar+ dPvyG+v++il+lqqq+++l+ael +++
  OWM78835.1  41 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKIFGASNVSKLLLHIPVNRRHDAVVTISYEAQARLADPVYGSVSTILALQQQVASLQAELTMVQ 139
                 7***********************9989*********************************************************************99 PP

      DUF260  99 eel 101
                 ++l
  OWM78835.1 140 SQL 142
                 885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MADPQDGNAS SPFESSQRSA HKQAVSMEAK VSAAAPLPVA PCGACKFLRR KCVSGCIFAP  60
HFGSDQGAAR FAAVHKIFGA SNVSKLLLHI PVNRRHDAVV TISYEAQARL ADPVYGSVST  120
ILALQQQVAS LQAELTMVQS QLINSRYAVA NALHSHGPDA QLLPSHHQSM SVPVCQQPAY  180
SNNSSASNLI DGSFSHFATD DFVAPESNDS NYINNSRSKN NNAASSGPPE TFPRRSQDEE  240
DGEEEYRNGL SISMHTDKML LSRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.16e-62LBD family protein