PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM78686.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

LBD

Protein Properties

Length: 262aa MW: 28603.7 Da PI: 8.5909

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM78686.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	110.3	1.5e-34	17	112	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 aCa+Ck++r+kC ++Cvlap+fpae++++f +++k+FG+sn++k++k++ +e+r+d+++sl++eA +++rdPv+G g ++lq++l+ k+ la+ OWM78686.1 17 ACASCKHQRKKCDEKCVLAPHFPAERKAEFDAAQKVFGVSNMSKMMKKVLPEQRTDVAESLIWEATCWTRDPVQGPRGEHKQLQHELDYYKELLAK 112 7***************************************************************************************99987776 PP

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence
MHPQQNGGVA AVAGQPACAS CKHQRKKCDE KCVLAPHFPA ERKAEFDAAQ KVFGVSNMSK 60 MMKKVLPEQR TDVAESLIWE ATCWTRDPVQ GPRGEHKQLQ HELDYYKELL AKFQCPQRFK 120 PAPAPATALP SGSAPGGWGY PNTRNHSHSN GYRNEANGII TGNGASSNHA NAVNFTGGHQ 180 IISNATAPAT ALTYVHDNGS SIIDPSPYGS ANSNGQSRET VSHQEREIAS SMRLATQMHP 240 SHHRINGFNH QQGYYDFPGN HQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	9e-33	LBD family protein