PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM78074.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

bHLH

Protein Properties

Length: 575aa MW: 61504.8 Da PI: 6.7656

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM78074.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.5	2.1e-12	369	415	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L OWM78074.1 369 MNHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 415 5899*********************6.....4*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence
MASLGNPAPA PQPSTSCLQQ RLQLIVRNQP ELWAYAIFWQ TLHGDAGHPF LAWGDGHFQS 60 NTAGSNLIMS SSSSSSSSSP LPSPSASSGG NGGSTVPSSE RRKVIKEIQA LIGDTHPDIG 120 ISIHGDVSDA EWFYVMSLTS TFSAGDGTLP GKVLSTGSLV WLSGAPDLQF YNCERAKEAQ 180 LHGIQTLVCI PTPDGVLELG SSDVVRENWD LTQQAKSLFG SPSSDLMVAA AAPLSPPNIP 240 FLDRNISFAD VGIIAGVQED EFTAAQPGDH HYHRSKAKTI TKHNNVSSCS YENSGAMARH 300 NNNNNNNRGG HINSSCYMES VHSDSDSPPL NSPKGGVANI NIAAASDERM MRAPKKRGRK 360 PGMGRETPMN HVEAERQRRE KLNHRFYALR AVVPNVSRMD KASLLSDAVS YINELKSKIS 420 DLESQLSAPP AQQQIRESSA AATTDSSKKP VKLEHAVSHA AMDNQSTTTS IDDHAAVAAT 480 STYSPSSSSP ASGLGQLKVE VKIVGTDAMI RVQSDSCNYP NAKLMSAMRD LQLQIHHASM 540 STVKDLMLQD VVVRVPDGLQ TEEALRAALL PALNA

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence

MASLGNPAPA PQPSTSCLQQ RLQLIVRNQP ELWAYAIFWQ TLHGDAGHPF LAWGDGHFQS  60
NTAGSNLIMS SSSSSSSSSP LPSPSASSGG NGGSTVPSSE RRKVIKEIQA LIGDTHPDIG  120
ISIHGDVSDA EWFYVMSLTS TFSAGDGTLP GKVLSTGSLV WLSGAPDLQF YNCERAKEAQ  180
LHGIQTLVCI PTPDGVLELG SSDVVRENWD LTQQAKSLFG SPSSDLMVAA AAPLSPPNIP  240
FLDRNISFAD VGIIAGVQED EFTAAQPGDH HYHRSKAKTI TKHNNVSSCS YENSGAMARH  300
NNNNNNNRGG HINSSCYMES VHSDSDSPPL NSPKGGVANI NIAAASDERM MRAPKKRGRK  360
PGMGRETPMN HVEAERQRRE KLNHRFYALR AVVPNVSRMD KASLLSDAVS YINELKSKIS  420
DLESQLSAPP AQQQIRESSA AATTDSSKKP VKLEHAVSHA AMDNQSTTTS IDDHAAVAAT  480
STYSPSSSSP ASGLGQLKVE VKIVGTDAMI RVQSDSCNYP NAKLMSAMRD LQLQIHHASM  540
STVKDLMLQD VVVRVPDGLQ TEEALRAALL PALNA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17880.1	2e-89	bHLH family protein