PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM77890.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

bHLH

Protein Properties

Length: 684aa MW: 76161.5 Da PI: 5.749

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM77890.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44	4.1e-14	473	519	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ OWM77890.1 473 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 519 7999********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence
MAVPPSSRLQ SMLQAAVQSV KWTYSLFWHI CPQQGILIWG DGYYNGPIKT RKTVQPMEVS 60 AEEASLQRSQ HLRELYESLS AGETNQPARR PCASLSPEDL TETEWFYLMC VSFSFPPGVG 120 LPGKAYARRQ HVWLTGANEV DSKTFSRAIL AKTVVCIPLL DGVVELGTTE RIQEDIGFTT 180 HVKSFFIDHQ PPLPPKPALS EHSTSNPATS SDHPRFNSPP VPSIVYAAAA VDPPVAAHQA 240 ADDEEEDEEE EDEAESDSEA ETGQAASRQA VGQNPQAGVV GAAEQSELMQ LEMSEDIRLG 300 SPDDASNNLD SDFHMLTVNQ AGNINQADHQ RRIDSFRAES SRRWQMMQDP LRSSLQGPPS 360 GPPQLDELSQ EDTHYSQTIS TILQSQPNRW AEISSTSYVS YSAQSAFSKW STRADHLLHV 420 PAEGTSQWLL KYILFSVPFL HNKYRDEHSP KSRDGESSTR FRKGTQQDEP SANHVLAERR 480 RREKLNERFI ILRSLVPFVT KMDKASILGD TIEYVKQLRK KIQDLEAKNR QMEADQRSRQ 540 IGEPQRSGSV DRAARMAPLA TEKRKMRIVE GNGGAKPKAV ESQAPPLPLP PPAPAPMETS 600 VQVSIIESDG LIELQCPHKE GLLLDVMQML RELRIEITAV QSSLTNGFFV AELRAKVKEN 660 LNGKKASIVE VKRAIQQLIP HTDS

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence

MAVPPSSRLQ SMLQAAVQSV KWTYSLFWHI CPQQGILIWG DGYYNGPIKT RKTVQPMEVS  60
AEEASLQRSQ HLRELYESLS AGETNQPARR PCASLSPEDL TETEWFYLMC VSFSFPPGVG  120
LPGKAYARRQ HVWLTGANEV DSKTFSRAIL AKTVVCIPLL DGVVELGTTE RIQEDIGFTT  180
HVKSFFIDHQ PPLPPKPALS EHSTSNPATS SDHPRFNSPP VPSIVYAAAA VDPPVAAHQA  240
ADDEEEDEEE EDEAESDSEA ETGQAASRQA VGQNPQAGVV GAAEQSELMQ LEMSEDIRLG  300
SPDDASNNLD SDFHMLTVNQ AGNINQADHQ RRIDSFRAES SRRWQMMQDP LRSSLQGPPS  360
GPPQLDELSQ EDTHYSQTIS TILQSQPNRW AEISSTSYVS YSAQSAFSKW STRADHLLHV  420
PAEGTSQWLL KYILFSVPFL HNKYRDEHSP KSRDGESSTR FRKGTQQDEP SANHVLAERR  480
RREKLNERFI ILRSLVPFVT KMDKASILGD TIEYVKQLRK KIQDLEAKNR QMEADQRSRQ  540
IGEPQRSGSV DRAARMAPLA TEKRKMRIVE GNGGAKPKAV ESQAPPLPLP PPAPAPMETS  600
VQVSIIESDG LIELQCPHKE GLLLDVMQML RELRIEITAV QSSLTNGFFV AELRAKVKEN  660
LNGKKASIVE VKRAIQQLIP HTDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	478	483	ERRRRE
2	479	484	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	1e-99	bHLH family protein