PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM77633.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 415aa MW: 45271.1 Da PI: 10.5686

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM77633.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00039	182	204	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F+ + ++H + H OWM77633.1 182 TCQKCGEEFKKLDAVESHHLSqH 204 8*****************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MRAAIWFALR RSFHCSTDPA EVSGPAKHQR TTKSKARLRS CGCSRSISTL RDVVQGSSRR 60 HSGRPQSCSP RSIASSEFMN TITHEVVFKD SKCEIKILSI NNGGGKVRTG SLGSGSGFVG 120 SLTPGTPGPR GLHIVPGSGY DHPRKQTVGT PTRKGRRGAS RKTKERPGVR SESVVGNSLV 180 LTCQKCGEEF KKLDAVESHH LSQHAVTALI EGDSSRKIVE IICQASWLKS DTRTGHIDRV 240 LKVHNMQRTP ARFEEYREMV KIRASKLSKK HPRCLADGNE LLRFYGTVLA CSLGSKSSGL 300 CGSENCGVCR ILRRGFPSKK ELNDSIGIFT ASTSGRAIES ICLRKEDQSL RKALVVCRVI 360 AGRVHRPLEN FQEAAINPSG FDSVAGKVGC FSNIEELYVL NPKALLPCFV VICKP

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MRAAIWFALR RSFHCSTDPA EVSGPAKHQR TTKSKARLRS CGCSRSISTL RDVVQGSSRR  60
HSGRPQSCSP RSIASSEFMN TITHEVVFKD SKCEIKILSI NNGGGKVRTG SLGSGSGFVG  120
SLTPGTPGPR GLHIVPGSGY DHPRKQTVGT PTRKGRRGAS RKTKERPGVR SESVVGNSLV  180
LTCQKCGEEF KKLDAVESHH LSQHAVTALI EGDSSRKIVE IICQASWLKS DTRTGHIDRV  240
LKVHNMQRTP ARFEEYREMV KIRASKLSKK HPRCLADGNE LLRFYGTVLA CSLGSKSSGL  300
CGSENCGVCR ILRRGFPSKK ELNDSIGIFT ASTSGRAIES ICLRKEDQSL RKALVVCRVI  360
AGRVHRPLEN FQEAAINPSG FDSVAGKVGC FSNIEELYVL NPKALLPCFV VICKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-131	C2H2 family protein