PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM77147.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 445aa MW: 48915.3 Da PI: 9.8004

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM77147.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	97	119	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H OWM77147.1 97 FVCEICNKGFQRDQNLQLHRRGH 119 89*******************88 PP
2	zf-C2H2	14	0.00015	177	199	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ OWM77147.1 177 WKCEKCSKVYAVQSDWKAHSKTC 199 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence
MSSNSSSLSE EPNSNSLFSI TTATTAATAA NRPTPSALIH DFEDFKDNNP QLLPAAIPPP 60 LPQQHKIKKK RSLPGNPDPD AEVIALSPKT LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN 120 LPWKLKKRSS NGKDQLVRKR AYVCPEPTCV HHHPSRALGD LTGIKKHYCR KHGERKWKCE 180 KCSKVYAVQS DWKAHSKTCG TREYRCDCGT LFSRKDSFIT HRAFCDALAE ESARLILANQ 240 QGQLAPGSSM VHPQHPNVIA SHHHNPSGLF PFPPQNPNPN PSPTPPSHYP FPGLSQKGDA 300 QNPNFPNNFL APPPAFSHHL SATALLQKAA TLGATTSNRL GGPIADHMTQ LGMNDMEMAM 360 KVSPNYSLGF GQGNLGDLWM KKSTEGEITR DFLGLRGEDH HHRQHGGEGS SSMVMKPHGL 420 VQNFGLMANP PAINNVATTS SRIWG

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence

MSSNSSSLSE EPNSNSLFSI TTATTAATAA NRPTPSALIH DFEDFKDNNP QLLPAAIPPP  60
LPQQHKIKKK RSLPGNPDPD AEVIALSPKT LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN  120
LPWKLKKRSS NGKDQLVRKR AYVCPEPTCV HHHPSRALGD LTGIKKHYCR KHGERKWKCE  180
KCSKVYAVQS DWKAHSKTCG TREYRCDCGT LFSRKDSFIT HRAFCDALAE ESARLILANQ  240
QGQLAPGSSM VHPQHPNVIA SHHHNPSGLF PFPPQNPNPN PSPTPPSHYP FPGLSQKGDA  300
QNPNFPNNFL APPPAFSHHL SATALLQKAA TLGATTSNRL GGPIADHMTQ LGMNDMEMAM  360
KVSPNYSLGF GQGNLGDLWM KKSTEGEITR DFLGLRGEDH HHRQHGGEGS SSMVMKPHGL  420
VQNFGLMANP PAINNVATTS SRIWG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-108	C2H2 family protein