PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OWM76574.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 258aa MW: 28935.5 Da PI: 4.3945 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 38.4 | 3.6e-12 | 1 | 42 | 58 | 99 |
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 m++++y+++ara+dPv+G++g++++lq+q+e +ael+l+ + OWM76574.1 1 MRTIIYQSDARAHDPVSGCYGMVRDLQRQIELCQAELELVLR 42 89***********************************98765 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence |
MRTIIYQSDA RAHDPVSGCY GMVRDLQRQI ELCQAELELV LRQLDFFRQQ EAAAALGCDL 60 MSGPNATAAT STDPFVQAFG ALPSDEPHQA NNNGLVDEFN VNHNNVNSDA VAWAMQDCSS 120 PTSNGNNGVN VMPHHHQQHQ QLFHQHVGDG SDDHDNDNGK QMQGFNMVDQ CNDMKPLILD 180 LPPDDHREQH HDLGFSSDVA INRSNQPILE MDQCRMTKIR EDDEEDQNNQ RQGVIDFHQD 240 HNDLKDAATF FTLTNCSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13850.1 | 7e-15 | LBD family protein |