PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM76396.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

Trihelix

Protein Properties

Length: 430aa MW: 49041.2 Da PI: 9.1319

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM76396.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.6	1.1e-25	30	110	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+ +e+laL+++r+em+ +++++ k+plWe+vskk++e g++rs+k+Ckek+en+ k++k+ ke+ + +++++f+qlea OWM76396.1 30 RWPTEETLALLKVRSEMDLAFKDSGVKAPLWEQVSKKLAELGYHRSAKKCKEKFENIYKYHKRAKEQHST------KSYRFFEQLEA 110 8***************************************************************9997......4599**985 PP
2	trihelix	99	4e-31	283	367	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+ev aLi ++++++ ++ ++ k+plWee+s+ m++ g++rs k+Ckekwen+nk++k++ke++k+r +e+ +tcpyf+ql+ OWM76396.1 283 RWPKEEVEALISLKSSLDLQYHESGPKGPLWEEISSGMKRLGYNRSGKRCKEKWENINKYFKRVKESKKRR-PEDAKTCPYFEQLN 367 8******************************************************************97.99999*****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MLGGLSTLPE NPTAGGSKGE EGDRSSAGNR WPTEETLALL KVRSEMDLAF KDSGVKAPLW 60 EQVSKKLAEL GYHRSAKKCK EKFENIYKYH KRAKEQHSTK SYRFFEQLEA FESHQPIPLP 120 VSLNPPIVSR TPVENIMPTT AGISNSIVLS SSEEEMEGGS KKKRKLAKYF ERLMKKLLEK 180 QESLQRQFIE VLEKYERDRV AREEAWKVQE LARLEREREL LVQERSIAAA KDAAVLAFLQ 240 KFSDQSGAAK RHENLSQVII EAVDCNNSSA NTNSGVIHAS SSRWPKEEVE ALISLKSSLD 300 LQYHESGPKG PLWEEISSGM KRLGYNRSGK RCKEKWENIN KYFKRVKESK KRRPEDAKTC 360 PYFEQLNALY GQRSNKSRKG GEPLMHSVDR EGTDKQEHRE GTKRDEESER SDPEIEREHD 420 NLDGSQSVAA

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MLGGLSTLPE NPTAGGSKGE EGDRSSAGNR WPTEETLALL KVRSEMDLAF KDSGVKAPLW  60
EQVSKKLAEL GYHRSAKKCK EKFENIYKYH KRAKEQHSTK SYRFFEQLEA FESHQPIPLP  120
VSLNPPIVSR TPVENIMPTT AGISNSIVLS SSEEEMEGGS KKKRKLAKYF ERLMKKLLEK  180
QESLQRQFIE VLEKYERDRV AREEAWKVQE LARLEREREL LVQERSIAAA KDAAVLAFLQ  240
KFSDQSGAAK RHENLSQVII EAVDCNNSSA NTNSGVIHAS SSRWPKEEVE ALISLKSSLD  300
LQYHESGPKG PLWEEISSGM KRLGYNRSGK RCKEKWENIN KYFKRVKESK KRRPEDAKTC  360
PYFEQLNALY GQRSNKSRKG GEPLMHSVDR EGTDKQEHRE GTKRDEESER SDPEIEREHD  420
NLDGSQSVAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	161	166	KKKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-100	Trihelix family protein