PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM76249.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

CO-like

Protein Properties

Length: 477aa MW: 51801 Da PI: 7.0783

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM76249.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.5	5e-07	13	55	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ ++e + l+C+ ++ lC C ++ H+ Ht+++ OWM76249.1 13 PCDFCSERAAVLYCRADSAKLCLFCDQHVHSAnllsrkHTRSQ 55 6****99*******************6688888998765 PP
2	zf-B_box	21.4	5.1e-07	54	98	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C++++ ++++ C +++ lC++C H + H+++p OWM76249.1 54 SQICDNCSAEPVSVRCSTDNLVLCHECDWDAHGScpvsasHDRTP 98 689*************************99995488888888877 PP
3	CCT	65	2.2e-22	429	472	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a+lRYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++ OWM76249.1 429 RDSAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAT 472 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MVNPKSRTGV SAPCDFCSER AAVLYCRADS AKLCLFCDQH VHSANLLSRK HTRSQICDNC 60 SAEPVSVRCS TDNLVLCHEC DWDAHGSCPV SASHDRTPVE GFSGCPSAPE LAALWGLDLE 120 KKKPSPTGQM NPLMPNVVYG FQDSIVPTNN PLIFSNMSCG EILNASKRQD PGTGRSKRVI 180 HEQLLELLKQ DVVSGAGGGN DNGEGGGGEN MVPGTPNINA WEGNIDGSGA GVFGDGASNT 240 AVGTVPSQML QQQGIFTSLL MLPGPMDLKE STEGNTQWES NPSRTAQIWD FNLGQLRDHE 300 EPGLLEVGYV TNDTGFTIKS YGELLKESSF TSTKVLEDMY QFNCSLAHED VTSFIQNKHP 360 AASQGPATSE SNNLPIPRTS PNAIPVKPKG FTVSTDNNQF ADQPVLVRSD SGRTTAARRA 420 NVDLLAQHRD SAMLRYKEKK KTRRYDKHIR YESRKARADT RKRVKGRFVK ATAAPDG

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MVNPKSRTGV SAPCDFCSER AAVLYCRADS AKLCLFCDQH VHSANLLSRK HTRSQICDNC  60
SAEPVSVRCS TDNLVLCHEC DWDAHGSCPV SASHDRTPVE GFSGCPSAPE LAALWGLDLE  120
KKKPSPTGQM NPLMPNVVYG FQDSIVPTNN PLIFSNMSCG EILNASKRQD PGTGRSKRVI  180
HEQLLELLKQ DVVSGAGGGN DNGEGGGGEN MVPGTPNINA WEGNIDGSGA GVFGDGASNT  240
AVGTVPSQML QQQGIFTSLL MLPGPMDLKE STEGNTQWES NPSRTAQIWD FNLGQLRDHE  300
EPGLLEVGYV TNDTGFTIKS YGELLKESSF TSTKVLEDMY QFNCSLAHED VTSFIQNKHP  360
AASQGPATSE SNNLPIPRTS PNAIPVKPKG FTVSTDNNQF ADQPVLVRSD SGRTTAARRA  420
NVDLLAQHRD SAMLRYKEKK KTRRYDKHIR YESRKARADT RKRVKGRFVK ATAAPDG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	1e-105	CO-like family protein