PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM75808.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

TCP

Protein Properties

Length: 380aa MW: 42231.3 Da PI: 6.041

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM75808.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	134.5	9.4e-42	118	252	3	133
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssaseceaesssssasnsssg..kaak 92 gkkdrhski T++g+RdRR+Rls+++a++fFdLq++LG+dk+s+ti+WLl +++ ai+el + + +++es ++s+ ++ ++ ++++ OWM75808.1 118 GKKDRHSKIRTAQGLRDRRIRLSVHIARKFFDLQEMLGLDKASETIDWLLSESEGAIDELSKKkcshlnmD------STPESAVVSETKEAEEeeEEEE 210 89***********************************************************75555442......3344444444433333222222 PP TCP 93 saa.kskksqksaasalnlakesrakarararertrekmrik 133 + ++++++k+a ++sr+kar+rarertrek +k OWM75808.1 211 GGQeSGQSKEKKACRITRTRRDSRNKARERARERTREKLVMK 252 233244555555555566666***************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MFPPSSFSDL HLQYTDKALV IGRSSSPIGP TFYDLDDELI FEQLFFQEGQ VTEARADVDI 60 NFTGSCYMMV ETTEGANQAG NPISPDRVLP SMVRPSKKTR GKAAGSRKLQ LMPRKRIGKK 120 DRHSKIRTAQ GLRDRRIRLS VHIARKFFDL QEMLGLDKAS ETIDWLLSES EGAIDELSKK 180 KCSHLNMDST PESAVVSETK EAEEEEEEEE GGQESGQSKE KKACRITRTR RDSRNKARER 240 ARERTREKLV MKGLNVEDSK QANEKPGNPK GGNLDGRVLG SPDNCRDSDH FGGHEMNASS 300 IIERFLGITS TTTKPSSYPD LNLEYGCYEM IGGVDFLEGN VQEIADSNSP SLFMASYGGP 360 QCNPNSILLN IPGLSQPKTA

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MFPPSSFSDL HLQYTDKALV IGRSSSPIGP TFYDLDDELI FEQLFFQEGQ VTEARADVDI  60
NFTGSCYMMV ETTEGANQAG NPISPDRVLP SMVRPSKKTR GKAAGSRKLQ LMPRKRIGKK  120
DRHSKIRTAQ GLRDRRIRLS VHIARKFFDL QEMLGLDKAS ETIDWLLSES EGAIDELSKK  180
KCSHLNMDST PESAVVSETK EAEEEEEEEE GGQESGQSKE KKACRITRTR RDSRNKARER  240
ARERTREKLV MKGLNVEDSK QANEKPGNPK GGNLDGRVLG SPDNCRDSDH FGGHEMNASS  300
IIERFLGITS TTTKPSSYPD LNLEYGCYEM IGGVDFLEGN VQEIADSNSP SLFMASYGGP  360
QCNPNSILLN IPGLSQPKTA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	3e-25	TCP family protein