PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM75799.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family RAV
Protein Properties Length: 372aa    MW: 41248.4 Da    PI: 8.8241
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM75799.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.61.5e-1376124155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  OWM75799.1  76 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAAQRFRG 124
                 78****9888.8*********3.....5**********99*************98 PP
2B3971.2e-30202306194
                 EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                 f+k+ tpsdv+k++rlv+pk++ae+h           ++ +++++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++L +gD+v F+++   
  OWM75799.1 202 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqggmtgnsNNANAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLSAGDTVCFQRSTGP 300
                 89****************************99998885556799**************************************************87656 PP

                 EE..EE CS
          B3  89 efelvv 94 
                 +++l++
  OWM75799.1 301 DRQLYI 306
                 666665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    
MDGSSMDEST TTDSITSIGP PHVSQVAPSA KSPPLEISLC RVGSGTSVIL DLEGGIEAES  60
RNNSNPRANG SKLPSSRYKG VVPQPNGRWG AQIYEKHQRV WLGTFNEEDE AARAYDIAAQ  120
RFRGRDAMTN LKPTEEDEVE AAFLGSHSKA EIVDMLRKHT YNDELEQSRR SYVLDRNGKR  180
VWGDESSTGP GQAQRAAREM LFEKAVTPSD VGKLNRLVIP KQHAEKHFPL QGGMTGNSNN  240
ANAKGVLLNF EDVGGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLSAGD TVCFQRSTGP  300
DRQLYIDFKP RGSLDRPDEP VPVQMVRLFG VNIFKVAAGT DVDGIIGRKR MREGVDFLGL  360
ECCKKQMMVG AL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-143RAV family protein